Analysis of interatomic Contacts of Structural Units in PDB entry:
4OO0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OO0 entry

There are 2 chains in PDB entry 4OO0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8PHE 215
B
 THR 12PHE 215
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 4OO0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 34Right-handed alpha
Helix 2
2
A
48 54Right-handed 310
Helix 3
3
A
60 84Right-handed alpha
Helix 4
4
A
109 121Right-handed alpha
Helix 5
5
A
156 166Right-handed alpha
Helix 6
6
A
172 176Right-handed 310
Helix 7
7
A
180 184Right-handed 310
Helix 8
8
A
192 198Right-handed alpha
Helix 9
9
A
200 211Right-handed alpha
Helix 10
10
B
24 34Right-handed alpha
Helix 11
11
B
48 54Right-handed 310
Helix 12
12
B
60 84Right-handed alpha
Helix 13
13
B
109 121Right-handed alpha
Helix 14
14
B
156 166Right-handed alpha
Helix 15
15
B
172 176Right-handed 310
Helix 16
16
B
180 184Right-handed 310
Helix 17
17
B
192 198Right-handed alpha
Helix 18
18
B
200 211Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4OO0. Click on sheet of interest to get list of strands forming it: A, B,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 40first strand
Strand 2
A
18 20parallel
Strand 3
A
90 99parallel
Strand 4
A
124 134anti-parallel
Strand 5
A
144 152anti-parallel
Strand 6
A
186 191anti-parallel
Strand 7
B
186 191anti-parallel
Strand 8
B
144 152anti-parallel
Strand 9
B
124 134anti-parallel
Strand 10
B
90 99anti-parallel
Strand 11
B
17 20parallel
Strand 12
B
37 40parallel
Back to list of sheets
Back to top of page

There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
A
90 99anti-parallel
Strand 3
A
124 134anti-parallel
Strand 4
A
144 152anti-parallel
Strand 5
A
186 191anti-parallel
Strand 6
B
186 191anti-parallel
Strand 7
B
144 152anti-parallel
Strand 8
B
124 134anti-parallel
Strand 9
B
90 99anti-parallel
Strand 10
B
102 104anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il