Analysis of interatomic Contacts of Structural Units in PDB entry:
4OO1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4OO1 entry

There are 5 chains in PDB entry 4OO1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	ASN 301
B	LEU 4	ASN 242
C	THR 6	ILE 394
D	MET 1	LEU 221
E	SER 2	SER 234

There are 77 helices in PDB entry 4OO1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	8	21	Right-handed alpha
Helix 2	2	A	84	88	Right-handed 310
Helix 3	3	A	98	113	Right-handed alpha
Helix 4	4	A	120	124	Right-handed 310
Helix 5	5	A	146	162	Right-handed alpha
Helix 6	6	A	224	229	Right-handed alpha
Helix 7	7	A	258	300	Right-handed alpha
Helix 8	8	B	94	112	Right-handed alpha
Helix 9	9	B	113	117	Right-handed 310
Helix 10	10	B	134	150	Right-handed alpha
Helix 11	11	B	175	180	Right-handed alpha
Helix 12	12	B	210	240	Right-handed alpha
Helix 13	13	C	18	26	Right-handed alpha
Helix 14	14	C	26	36	Right-handed alpha
Helix 15	15	C	60	64	Right-handed 310
Helix 16	16	C	145	163	Right-handed alpha
Helix 17	17	C	226	240	Right-handed alpha
Helix 18	18	C	303	307	Right-handed 310
Helix 19	19	C	337	342	Right-handed alpha
Helix 20	20	C	370	390	Right-handed alpha
Helix 21	21	D	60	78	Right-handed alpha
Helix 22	22	D	79	83	Right-handed 310
Helix 23	23	D	105	124	Right-handed alpha
Helix 24	24	D	150	156	Right-handed alpha
Helix 25	25	D	169	172	Right-handed alpha
Helix 26	26	D	187	218	Right-handed alpha
Helix 27	27	D	219	221	Right-handed 310
Helix 28	28	E	4	16	Right-handed alpha
Helix 29	29	E	89	103	Right-handed alpha
Helix 30	30	E	137	151	Right-handed alpha
Helix 31	31	E	202	207	Right-handed alpha
Helix 32	32	E	240	264	Right-handed alpha
Helix 33	33	F	106	125	Right-handed alpha
Helix 34	34	F	126	130	Right-handed 310
Helix 35	35	F	164	167	Right-handed 310
Helix 36	36	F	168	184	Right-handed alpha
Helix 37	37	F	222	248	Right-handed alpha
Helix 38	38	G	100	102	Right-handed 310
Helix 39	39	G	159	168	Right-handed alpha
Helix 40	40	G	174	182	Right-handed alpha
Helix 41	41	G	200	218	Right-handed alpha
Helix 42	42	G	219	221	Right-handed 310
Helix 43	43	G	222	232	Right-handed alpha
Helix 44	44	H	139	141	Right-handed 310
Helix 45	45	H	158	162	Right-handed 310
Helix 46	46	H	203	207	Right-handed 310
Helix 47	47	H	237	242	Right-handed alpha
Helix 48	48	H	243	249	Right-handed alpha
Helix 49	49	H	278	282	Right-handed 310
Helix 50	50	H	290	310	Right-handed alpha
Helix 51	51	H	315	326	Right-handed alpha
Helix 52	52	H	327	329	Right-handed 310
Helix 53	53	H	331	336	Right-handed 310
Helix 54	54	H	337	355	Right-handed alpha
Helix 55	55	I	208	210	Right-handed 310
Helix 56	56	I	219	223	Right-handed 310
Helix 57	57	J	161	166	Right-handed alpha
Helix 58	58	J	183	190	Right-handed alpha
Helix 59	59	J	221	230	Right-handed alpha
Helix 60	60	J	273	276	Right-handed 310
Helix 61	61	J	277	282	Right-handed alpha
Helix 62	62	J	295	303	Right-handed alpha
Helix 63	63	J	314	322	Right-handed alpha
Helix 64	64	J	327	335	Right-handed alpha
Helix 65	65	J	355	368	Right-handed alpha
Helix 66	66	J	368	383	Right-handed alpha
Helix 67	67	J	385	398	Right-handed alpha
Helix 68	68	J	425	432	Right-handed alpha
Helix 69	69	J	438	454	Right-handed alpha
Helix 70	70	J	459	464	Right-handed alpha
Helix 71	71	J	465	475	Right-handed alpha
Helix 72	72	J	480	485	Right-handed alpha
Helix 73	73	J	492	497	Right-handed alpha
Helix 74	74	J	497	513	Right-handed alpha
Helix 75	75	J	526	535	Right-handed alpha
Helix 76	76	J	538	555	Right-handed alpha
Helix 77	77	J	597	612	Right-handed alpha

There are 34 sheets in PDB entry 4OO1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	47	51	anti-parallel
Strand 3	A	54	65	anti-parallel
Strand 4	A	131	142	anti-parallel
Strand 5	A	76	80	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	164	first strand
Strand 2	A	185	186	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	170	first strand
Strand 2	A	173	176	anti-parallel

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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	233	239	anti-parallel
Strand 4	A	244	257	anti-parallel
Strand 5	B	195	201	anti-parallel
Strand 6	B	183	190	anti-parallel
Strand 7	B	158	166	anti-parallel
Strand 8	B	169	172	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	221	first strand
Strand 2	A	194	201	anti-parallel
Strand 3	A	233	239	anti-parallel
Strand 4	A	244	257	anti-parallel
Strand 5	B	205	206	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	26	first strand
Strand 2	B	38	44	anti-parallel
Strand 3	B	47	57	anti-parallel
Strand 4	B	121	130	anti-parallel
Strand 5	B	71	78	parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	12	first strand
Strand 2	J	616	621	anti-parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	50	first strand
Strand 2	J	582	583	anti-parallel
Strand 3	J	593	594	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	56	first strand
Strand 2	C	76	82	anti-parallel
Strand 3	C	85	92	anti-parallel
Strand 4	C	214	220	anti-parallel
Strand 5	C	131	136	parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	210	211	first strand
Strand 2	C	94	96	anti-parallel
Strand 3	F	16	17	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	128	first strand
Strand 2	C	165	166	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	176	178	first strand
Strand 2	C	186	188	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	247	first strand
Strand 2	C	275	283	anti-parallel

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There are 8 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	332	first strand
Strand 2	C	293	301	anti-parallel
Strand 3	C	346	351	anti-parallel
Strand 4	C	357	363	anti-parallel
Strand 5	D	173	186	anti-parallel
Strand 6	D	157	168	anti-parallel
Strand 7	D	130	139	anti-parallel
Strand 8	D	145	147	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	15	21	anti-parallel
Strand 3	D	24	34	anti-parallel
Strand 4	D	87	96	anti-parallel
Strand 5	D	47	53	parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	82	first strand
Strand 2	E	120	132	parallel
Strand 3	E	57	68	anti-parallel
Strand 4	E	46	51	anti-parallel
Strand 5	E	35	38	anti-parallel
Strand 6	H	9	11	parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	154	157	first strand
Strand 2	E	172	178	anti-parallel

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There are 7 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	196	199	first strand
Strand 2	E	186	193	anti-parallel
Strand 3	E	211	218	anti-parallel
Strand 4	E	221	227	anti-parallel
Strand 5	F	209	215	anti-parallel
Strand 6	F	199	204	anti-parallel
Strand 7	F	192	196	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	50	first strand
Strand 2	F	58	66	anti-parallel
Strand 3	F	69	82	anti-parallel
Strand 4	F	133	146	anti-parallel
Strand 5	F	92	99	parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	5	first strand
Strand 2	G	40	43	anti-parallel
Strand 3	G	56	59	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	27	first strand
Strand 2	G	34	36	anti-parallel

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There are 7 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	148	149	first strand
Strand 2	G	118	125	anti-parallel
Strand 3	G	133	135	anti-parallel
Strand 4	G	95	98	parallel
Strand 5	G	83	87	anti-parallel
Strand 6	G	71	79	anti-parallel
Strand 7	G	118	125	anti-parallel

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There are 3 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	154	157	first strand
Strand 2	G	193	197	anti-parallel
Strand 3	G	185	188	anti-parallel

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There are 4 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	55	first strand
Strand 2	H	86	91	anti-parallel
Strand 3	H	94	99	anti-parallel
Strand 4	H	68	69	parallel

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There are 3 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	60	62	first strand
Strand 2	H	79	82	anti-parallel
Strand 3	H	73	76	anti-parallel

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There are 7 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	192	193	first strand
Strand 2	H	168	176	anti-parallel
Strand 3	H	182	185	anti-parallel
Strand 4	H	134	137	parallel
Strand 5	H	123	127	anti-parallel
Strand 6	H	111	120	anti-parallel
Strand 7	H	168	176	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	197	201	first strand
Strand 2	H	230	235	anti-parallel
Strand 3	H	221	225	anti-parallel
Strand 4	H	214	217	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	11	first strand
Strand 2	I	62	67	anti-parallel
Strand 3	I	106	111	anti-parallel
Strand 4	I	29	36	parallel
Strand 5	I	21	26	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	16	19	first strand
Strand 2	I	51	58	anti-parallel
Strand 3	I	41	48	anti-parallel

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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	188	190	first strand
Strand 2	I	150	159	anti-parallel
Strand 3	I	138	146	anti-parallel
Strand 4	I	229	236	anti-parallel
Strand 5	I	253	254	anti-parallel

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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	188	190	first strand
Strand 2	I	150	159	anti-parallel
Strand 3	I	202	206	anti-parallel
Strand 4	I	242	246	parallel
Strand 5	I	229	236	anti-parallel
Strand 6	I	253	254	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	257	258	first strand
Strand 2	I	266	271	anti-parallel
Strand 3	I	274	276	anti-parallel
Strand 4	I	283	284	anti-parallel

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There are 6 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	213	216	first strand
Strand 2	J	262	266	parallel
Strand 3	J	250	257	anti-parallel
Strand 4	J	234	242	anti-parallel
Strand 5	J	287	290	parallel
Strand 6	J	311	313	parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	400	401	first strand
Strand 2	J	415	416	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4OO1

Analysis of interatomic Contacts of Structural Units in PDB entry:
4OO1