Analysis of interatomic Contacts of Structural Units in PDB entry:
4OO2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4OO2 entry

There are 4 chains in PDB entry 4OO2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 18	LEU 527
B	THR 18	GLY 526
C	GLY 17	GLY 526
D	GLY 17	LEU 527

There are104 helices in PDB entry 4OO2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	22	31	Right-handed alpha
Helix 2	2	A	52	66	Right-handed alpha
Helix 3	3	A	71	75	Right-handed alpha
Helix 4	4	A	89	91	Right-handed 310
Helix 5	5	A	95	113	Right-handed alpha
Helix 6	6	A	124	129	Right-handed alpha
Helix 7	7	A	135	139	Right-handed 310
Helix 8	8	A	141	156	Right-handed alpha
Helix 9	9	A	204	207	Right-handed 310
Helix 10	10	A	221	224	Right-handed 310
Helix 11	11	A	244	253	Right-handed alpha
Helix 12	12	A	260	265	Right-handed alpha
Helix 13	13	A	288	299	Right-handed alpha
Helix 14	14	A	300	332	Right-handed alpha
Helix 15	15	A	333	335	Right-handed 310
Helix 16	16	A	336	363	Right-handed alpha
Helix 17	17	A	368	370	Right-handed 310
Helix 18	18	A	375	401	Right-handed alpha
Helix 19	19	A	402	406	Right-handed 310
Helix 20	20	A	412	417	Right-handed alpha
Helix 21	21	A	420	428	Right-handed alpha
Helix 22	22	A	435	451	Right-handed alpha
Helix 23	23	A	452	465	Right-handed alpha
Helix 24	24	A	470	483	Right-handed alpha
Helix 25	25	A	484	498	Right-handed alpha
Helix 26	26	A	513	522	Right-handed alpha
Helix 27	27	A	523	525	Right-handed 310
Helix 28	28	B	22	30	Right-handed alpha
Helix 29	29	B	52	66	Right-handed alpha
Helix 30	30	B	71	75	Right-handed alpha
Helix 31	31	B	89	91	Right-handed 310
Helix 32	32	B	95	113	Right-handed alpha
Helix 33	33	B	124	129	Right-handed alpha
Helix 34	34	B	135	139	Right-handed 310
Helix 35	35	B	141	156	Right-handed alpha
Helix 36	36	B	204	207	Right-handed 310
Helix 37	37	B	221	224	Right-handed 310
Helix 38	38	B	244	252	Right-handed alpha
Helix 39	39	B	260	265	Right-handed alpha
Helix 40	40	B	288	299	Right-handed alpha
Helix 41	41	B	300	332	Right-handed alpha
Helix 42	42	B	333	335	Right-handed 310
Helix 43	43	B	336	363	Right-handed alpha
Helix 44	44	B	368	370	Right-handed 310
Helix 45	45	B	375	401	Right-handed alpha
Helix 46	46	B	402	407	Right-handed 310
Helix 47	47	B	412	417	Right-handed alpha
Helix 48	48	B	420	428	Right-handed alpha
Helix 49	49	B	435	451	Right-handed alpha
Helix 50	50	B	452	465	Right-handed alpha
Helix 51	51	B	470	483	Right-handed alpha
Helix 52	52	B	484	498	Right-handed alpha
Helix 53	53	B	513	523	Right-handed alpha
Helix 54	54	C	22	30	Right-handed alpha
Helix 55	55	C	52	66	Right-handed alpha
Helix 56	56	C	71	75	Right-handed alpha
Helix 57	57	C	89	91	Right-handed 310
Helix 58	58	C	95	113	Right-handed alpha
Helix 59	59	C	124	129	Right-handed alpha
Helix 60	60	C	135	139	Right-handed 310
Helix 61	61	C	141	156	Right-handed alpha
Helix 62	62	C	173	178	Right-handed alpha
Helix 63	63	C	204	207	Right-handed 310
Helix 64	64	C	244	253	Right-handed alpha
Helix 65	65	C	260	265	Right-handed alpha
Helix 66	66	C	288	299	Right-handed alpha
Helix 67	67	C	300	332	Right-handed alpha
Helix 68	68	C	333	335	Right-handed 310
Helix 69	69	C	336	363	Right-handed alpha
Helix 70	70	C	368	370	Right-handed 310
Helix 71	71	C	375	401	Right-handed alpha
Helix 72	72	C	402	407	Right-handed 310
Helix 73	73	C	412	417	Right-handed alpha
Helix 74	74	C	420	428	Right-handed alpha
Helix 75	75	C	435	451	Right-handed alpha
Helix 76	76	C	452	465	Right-handed alpha
Helix 77	77	C	470	483	Right-handed alpha
Helix 78	78	C	484	498	Right-handed alpha
Helix 79	79	C	513	524	Right-handed alpha
Helix 80	80	D	22	31	Right-handed alpha
Helix 81	81	D	52	66	Right-handed alpha
Helix 82	82	D	71	75	Right-handed alpha
Helix 83	83	D	89	91	Right-handed 310
Helix 84	84	D	95	113	Right-handed alpha
Helix 85	85	D	124	129	Right-handed alpha
Helix 86	86	D	135	140	Right-handed 310
Helix 87	87	D	141	156	Right-handed alpha
Helix 88	88	D	204	207	Right-handed 310
Helix 89	89	D	244	252	Right-handed alpha
Helix 90	90	D	260	265	Right-handed alpha
Helix 91	91	D	288	299	Right-handed alpha
Helix 92	92	D	300	332	Right-handed alpha
Helix 93	93	D	333	335	Right-handed 310
Helix 94	94	D	336	363	Right-handed alpha
Helix 95	95	D	368	370	Right-handed 310
Helix 96	96	D	375	401	Right-handed alpha
Helix 97	97	D	402	406	Right-handed 310
Helix 98	98	D	412	417	Right-handed alpha
Helix 99	99	D	420	428	Right-handed alpha
Helix 100	100	D	435	451	Right-handed alpha
Helix 101	101	D	452	465	Right-handed alpha
Helix 102	102	D	470	483	Right-handed alpha
Helix 103	103	D	484	498	Right-handed alpha
Helix 104	104	D	513	524	Right-handed alpha

There are 20 sheets in PDB entry 4OO2. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	42	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	237	240	parallel
Strand 4	A	268	279	anti-parallel
Strand 5	A	191	202	anti-parallel
Strand 6	A	183	186	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	78	first strand
Strand 2	A	85	87	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	162	first strand
Strand 2	A	209	212	parallel
Strand 3	A	226	231	anti-parallel
Strand 4	A	283	286	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	366	first strand
Strand 2	A	372	373	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	500	501	first strand
Strand 2	A	504	505	anti-parallel

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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	237	240	parallel
Strand 4	B	268	279	anti-parallel
Strand 5	B	191	202	anti-parallel
Strand 6	B	183	187	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	85	87	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	162	first strand
Strand 2	B	209	212	parallel
Strand 3	B	226	231	anti-parallel
Strand 4	B	283	286	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	365	366	first strand
Strand 2	B	372	373	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	500	501	first strand
Strand 2	B	504	505	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	43	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	237	240	parallel
Strand 4	C	268	279	anti-parallel
Strand 5	C	191	202	anti-parallel
Strand 6	C	183	187	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	78	first strand
Strand 2	C	85	87	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	162	first strand
Strand 2	C	209	212	parallel
Strand 3	C	226	231	anti-parallel
Strand 4	C	283	286	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	365	366	first strand
Strand 2	C	372	373	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	500	501	first strand
Strand 2	C	504	505	anti-parallel

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There are 6 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	43	first strand
Strand 2	D	35	38	anti-parallel
Strand 3	D	237	240	parallel
Strand 4	D	268	279	anti-parallel
Strand 5	D	191	202	anti-parallel
Strand 6	D	183	187	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	78	first strand
Strand 2	D	85	87	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	162	first strand
Strand 2	D	209	212	parallel
Strand 3	D	226	231	anti-parallel
Strand 4	D	283	286	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	365	366	first strand
Strand 2	D	372	373	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	500	501	first strand
Strand 2	D	504	505	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4OO2

Analysis of interatomic Contacts of Structural Units in PDB entry:
4OO2