Analysis of interatomic Contacts of Structural Units in PDB entry:
4OO8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4OO8 entry

There are 2 chains in PDB entry 4OO8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 3	GLY 1366
B	G 1	G 1

There are119 helices in PDB entry 4OO8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	59	94	Right-handed alpha
Helix 2	2	A	96	102	Right-handed alpha
Helix 3	3	A	121	132	Right-handed alpha
Helix 4	4	A	134	145	Right-handed alpha
Helix 5	5	A	150	164	Right-handed alpha
Helix 6	6	A	180	196	Right-handed alpha
Helix 7	7	A	207	213	Right-handed alpha
Helix 8	8	A	217	228	Right-handed alpha
Helix 9	9	A	236	247	Right-handed alpha
Helix 10	10	A	270	283	Right-handed alpha
Helix 11	11	A	286	306	Right-handed alpha
Helix 12	12	A	315	343	Right-handed alpha
Helix 13	13	A	346	352	Right-handed alpha
Helix 14	14	A	358	364	Right-handed alpha
Helix 15	15	A	368	383	Right-handed alpha
Helix 16	16	A	386	395	Right-handed alpha
Helix 17	17	A	406	410	Right-handed 310
Helix 18	18	A	411	426	Right-handed alpha
Helix 19	19	A	430	436	Right-handed alpha
Helix 20	20	A	436	446	Right-handed alpha
Helix 21	21	A	477	482	Right-handed alpha
Helix 22	22	A	483	494	Right-handed alpha
Helix 23	23	A	512	525	Right-handed alpha
Helix 24	24	A	541	552	Right-handed alpha
Helix 25	25	A	560	567	Right-handed alpha
Helix 26	26	A	591	602	Right-handed alpha
Helix 27	27	A	603	609	Right-handed alpha
Helix 28	28	A	612	626	Right-handed alpha
Helix 29	29	A	628	636	Right-handed alpha
Helix 30	30	A	637	640	Right-handed 310
Helix 31	31	A	644	654	Right-handed alpha
Helix 32	32	A	663	669	Right-handed alpha
Helix 33	33	A	678	685	Right-handed alpha
Helix 34	34	A	692	699	Right-handed alpha
Helix 35	35	A	703	710	Right-handed alpha
Helix 36	36	A	719	727	Right-handed alpha
Helix 37	37	A	730	751	Right-handed alpha
Helix 38	38	A	776	792	Right-handed alpha
Helix 39	39	A	803	807	Right-handed 310
Helix 40	40	A	808	817	Right-handed alpha
Helix 41	41	A	851	855	Right-handed 310
Helix 42	42	A	861	865	Right-handed 310
Helix 43	43	A	872	889	Right-handed alpha
Helix 44	44	A	893	901	Right-handed alpha
Helix 45	45	A	902	906	Right-handed 310
Helix 46	46	A	909	919	Right-handed alpha
Helix 47	47	A	925	940	Right-handed alpha
Helix 48	48	A	960	970	Right-handed alpha
Helix 49	49	A	980	1001	Right-handed alpha
Helix 50	50	A	1030	1040	Right-handed alpha
Helix 51	51	A	1040	1045	Right-handed alpha
Helix 52	52	A	1078	1087	Right-handed alpha
Helix 53	53	A	1127	1132	Right-handed alpha
Helix 54	54	A	1170	1177	Right-handed alpha
Helix 55	55	A	1177	1184	Right-handed alpha
Helix 56	56	A	1191	1195	Right-handed 310
Helix 57	57	A	1207	1209	Right-handed 310
Helix 58	58	A	1229	1242	Right-handed alpha
Helix 59	59	A	1250	1254	Right-handed alpha
Helix 60	60	A	1254	1263	Right-handed alpha
Helix 61	61	A	1265	1280	Right-handed alpha
Helix 62	62	A	1283	1297	Right-handed alpha
Helix 63	63	A	1301	1310	Right-handed alpha
Helix 64	64	A	1311	1315	Right-handed 310
Helix 65	65	A	1340	1344	Right-handed 310
Helix 66	66	A	1363	1366	Right-handed 310
Helix 67	67	D	59	94	Right-handed alpha
Helix 68	68	D	96	102	Right-handed alpha
Helix 69	69	D	121	132	Right-handed alpha
Helix 70	70	D	134	145	Right-handed alpha
Helix 71	71	D	150	164	Right-handed alpha
Helix 72	72	D	180	196	Right-handed alpha
Helix 73	73	D	207	213	Right-handed alpha
Helix 74	74	D	217	227	Right-handed alpha
Helix 75	75	D	236	246	Right-handed alpha
Helix 76	76	D	270	283	Right-handed alpha
Helix 77	77	D	286	306	Right-handed alpha
Helix 78	78	D	315	343	Right-handed alpha
Helix 79	79	D	346	352	Right-handed alpha
Helix 80	80	D	358	364	Right-handed alpha
Helix 81	81	D	368	383	Right-handed alpha
Helix 82	82	D	386	395	Right-handed alpha
Helix 83	83	D	404	410	Right-handed 310
Helix 84	84	D	411	424	Right-handed alpha
Helix 85	85	D	431	436	Right-handed alpha
Helix 86	86	D	436	446	Right-handed alpha
Helix 87	87	D	477	482	Right-handed alpha
Helix 88	88	D	483	494	Right-handed alpha
Helix 89	89	D	512	525	Right-handed alpha
Helix 90	90	D	541	552	Right-handed alpha
Helix 91	91	D	560	568	Right-handed alpha
Helix 92	92	D	591	601	Right-handed alpha
Helix 93	93	D	603	609	Right-handed alpha
Helix 94	94	D	612	626	Right-handed alpha
Helix 95	95	D	628	635	Right-handed alpha
Helix 96	96	D	644	654	Right-handed alpha
Helix 97	97	D	663	669	Right-handed alpha
Helix 98	98	D	678	685	Right-handed alpha
Helix 99	99	D	692	697	Right-handed alpha
Helix 100	100	D	703	710	Right-handed alpha
Helix 101	101	D	719	726	Right-handed alpha
Helix 102	102	D	730	732	Right-handed 310
Helix 103	103	D	733	751	Right-handed alpha
Helix 104	104	D	920	940	Right-handed alpha
Helix 105	105	D	960	970	Right-handed alpha
Helix 106	106	D	980	1001	Right-handed alpha
Helix 107	107	D	1039	1047	Right-handed alpha
Helix 108	108	D	1078	1087	Right-handed alpha
Helix 109	109	D	1127	1132	Right-handed alpha
Helix 110	110	D	1170	1177	Right-handed alpha
Helix 111	111	D	1177	1186	Right-handed alpha
Helix 112	112	D	1191	1195	Right-handed 310
Helix 113	113	D	1229	1239	Right-handed alpha
Helix 114	114	D	1250	1260	Right-handed alpha
Helix 115	115	D	1264	1281	Right-handed alpha
Helix 116	116	D	1283	1296	Right-handed alpha
Helix 117	117	D	1301	1313	Right-handed alpha
Helix 118	118	D	1314	1316	Right-handed 310
Helix 119	119	D	1339	1344	Right-handed 310

There are 16 sheets in PDB entry 4OO8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	954	958	first strand
Strand 2	A	758	763	parallel
Strand 3	A	6	11	parallel
Strand 4	A	15	21	anti-parallel
Strand 5	A	48	52	anti-parallel
Strand 6	A	1093	1096	parallel

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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	46	first strand
Strand 2	A	29	36	anti-parallel
Strand 3	A	1357	1361	parallel
Strand 4	A	1346	1350	anti-parallel
Strand 5	A	1203	1205	anti-parallel
Strand 6	A	1211	1214	anti-parallel
Strand 7	A	1220	1222	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	539	first strand
Strand 2	A	528	530	anti-parallel
Strand 3	A	579	581	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	837	839	first strand
Strand 2	A	856	858	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1064	1066	first strand
Strand 2	A	1072	1075	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1121	first strand
Strand 2	A	1133	1134	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1156	1167	first strand
Strand 2	A	1139	1151	anti-parallel
Strand 3	A	1196	1198	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1324	1326	first strand
Strand 2	A	1329	1331	anti-parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	954	959	first strand
Strand 2	D	758	763	parallel
Strand 3	D	6	11	parallel
Strand 4	D	15	21	anti-parallel
Strand 5	D	48	52	anti-parallel
Strand 6	D	1093	1096	parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	33	first strand
Strand 2	D	42	46	anti-parallel

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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	36	first strand
Strand 2	D	1357	1361	parallel
Strand 3	D	1346	1350	anti-parallel
Strand 4	D	1202	1205	anti-parallel
Strand 5	D	1211	1216	anti-parallel
Strand 6	D	1219	1222	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	528	531	first strand
Strand 2	D	578	581	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1064	1066	first strand
Strand 2	D	1072	1075	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1120	1121	first strand
Strand 2	D	1133	1134	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1156	1167	first strand
Strand 2	D	1139	1151	anti-parallel
Strand 3	D	1196	1198	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1324	1326	first strand
Strand 2	D	1329	1331	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4OO8

Analysis of interatomic Contacts of Structural Units in PDB entry:
4OO8