Analysis of interatomic Contacts of Structural Units in PDB entry:
4OOF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OOF entry

There are 2 chains in PDB entry 4OOF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 11GLY 388
B
 GLY 11GLY 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 4OOF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
22 34Right-handed alpha
Helix 2
2
A
50 62Right-handed alpha
Helix 3
3
A
70 78Right-handed alpha
Helix 4
4
A
86 94Right-handed alpha
Helix 5
5
A
106 108Right-handed 310
Helix 6
6
A
109 120Right-handed alpha
Helix 7
7
A
127 135Right-handed alpha
Helix 8
8
A
135 142Right-handed alpha
Helix 9
9
A
151 162Right-handed alpha
Helix 10
10
A
163 164Right-handed 310
Helix 11
11
A
165 167Right-handed 310
Helix 12
12
A
185 191Right-handed alpha
Helix 13
13
A
193 198Right-handed alpha
Helix 14
14
A
206 216Right-handed alpha
Helix 15
15
A
216 231Right-handed alpha
Helix 16
16
A
233 235Right-handed 310
Helix 17
17
A
267 277Right-handed alpha
Helix 18
18
A
307 319Right-handed alpha
Helix 19
19
A
321 339Right-handed alpha
Helix 20
20
A
345 357Right-handed alpha
Helix 21
21
A
358 362Right-handed 310
Helix 22
22
A
367 387Right-handed alpha
Helix 23
23
B
22 35Right-handed alpha
Helix 24
24
B
50 62Right-handed alpha
Helix 25
25
B
70 78Right-handed alpha
Helix 26
26
B
86 95Right-handed alpha
Helix 27
27
B
106 108Right-handed 310
Helix 28
28
B
109 119Right-handed alpha
Helix 29
29
B
127 135Right-handed alpha
Helix 30
30
B
135 141Right-handed alpha
Helix 31
31
B
151 161Right-handed alpha
Helix 32
32
B
162 164Right-handed 310
Helix 33
33
B
165 167Right-handed 310
Helix 34
34
B
185 190Right-handed alpha
Helix 35
35
B
193 198Right-handed alpha
Helix 36
36
B
206 216Right-handed alpha
Helix 37
37
B
216 231Right-handed alpha
Helix 38
38
B
233 235Right-handed 310
Helix 39
39
B
267 277Right-handed alpha
Helix 40
40
B
307 319Right-handed alpha
Helix 41
41
B
321 339Right-handed alpha
Helix 42
42
B
345 356Right-handed alpha
Helix 43
43
B
357 362Right-handed 310
Helix 44
44
B
367 388Right-handed alpha
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There are 4 sheets in PDB entry 4OOF. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 83first strand
Strand 2
A
66 68parallel
Strand 3
A
39 46parallel
Strand 4
A
13 18parallel
Strand 5
A
99 102parallel
Strand 6
A
122 125parallel
Strand 7
A
147 149parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 241first strand
Strand 2
A
169 176parallel
Strand 3
A
247 253anti-parallel
Strand 4
A
258 262anti-parallel
Strand 5
B
258 262anti-parallel
Strand 6
B
247 253anti-parallel
Strand 7
B
169 176anti-parallel
Strand 8
B
237 241parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 298first strand
Strand 2
B
294 298anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 83first strand
Strand 2
B
66 68parallel
Strand 3
B
39 46parallel
Strand 4
B
13 18parallel
Strand 5
B
99 102parallel
Strand 6
B
122 125parallel
Strand 7
B
147 149parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il