Analysis of interatomic Contacts of Structural Units in PDB entry:
4OOZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OOZ entry

There are 2 chains in PDB entry 4OOZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 20HIS 387
B
 SER 20HIS 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 4OOZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
57 75Right-handed alpha
Helix 2
2
A
108 123Right-handed alpha
Helix 3
3
A
139 144Right-handed alpha
Helix 4
4
A
148 159Right-handed alpha
Helix 5
5
A
159 168Right-handed alpha
Helix 6
6
A
200 205Right-handed alpha
Helix 7
7
A
214 233Right-handed alpha
Helix 8
8
A
250 254Right-handed 310
Helix 9
9
A
259 266Right-handed alpha
Helix 10
10
A
297 302Right-handed 310
Helix 11
11
A
322 333Right-handed alpha
Helix 12
12
A
352 361Right-handed alpha
Helix 13
13
B
57 75Right-handed alpha
Helix 14
14
B
108 123Right-handed alpha
Helix 15
15
B
139 144Right-handed alpha
Helix 16
16
B
148 159Right-handed alpha
Helix 17
17
B
159 167Right-handed alpha
Helix 18
18
B
193 197Right-handed 310
Helix 19
19
B
214 233Right-handed alpha
Helix 20
20
B
250 254Right-handed 310
Helix 21
21
B
259 266Right-handed alpha
Helix 22
22
B
298 302Right-handed 310
Helix 23
23
B
314 318Right-handed 310
Helix 24
24
B
322 333Right-handed alpha
Helix 25
25
B
352 362Right-handed alpha
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There are 6 sheets in PDB entry 4OOZ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
29 32anti-parallel
Strand 3
A
35 37anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
173 180parallel
Strand 3
A
126 133parallel
Strand 4
A
79 86parallel
Strand 5
A
39 45parallel
Strand 6
A
337 340parallel
Strand 7
A
308 313parallel
Strand 8
A
277 278parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
100 102anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 26first strand
Strand 2
B
29 31anti-parallel
Strand 3
B
36 37anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 239first strand
Strand 2
B
173 180parallel
Strand 3
B
126 133parallel
Strand 4
B
79 86parallel
Strand 5
B
39 45parallel
Strand 6
B
337 341parallel
Strand 7
B
308 310parallel
Strand 8
B
277 279parallel
Strand 9
B
241 242parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 94first strand
Strand 2
B
100 102anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il