Analysis of interatomic Contacts of Structural Units in PDB entry:
4OPA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OPA entry

There are 2 chains in PDB entry 4OPA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ASP 2TRP 198
A
 ASN 4PHE 196
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 14 helices in PDB entry 4OPA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
2 25Right-handed alpha
Helix 2
2
B
29 51Right-handed alpha
Helix 3
3
B
53 72Right-handed alpha
Helix 4
4
B
74 78Right-handed 310
Helix 5
5
B
89 95Right-handed alpha
Helix 6
6
B
165 183Right-handed alpha
Helix 7
7
B
190 196Right-handed alpha
Helix 8
8
A
5 25Right-handed alpha
Helix 9
9
A
29 50Right-handed alpha
Helix 10
10
A
53 71Right-handed alpha
Helix 11
11
A
89 95Right-handed alpha
Helix 12
12
A
165 181Right-handed alpha
Helix 13
13
A
182 184Right-handed 310
Helix 14
14
A
190 195Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4OPA. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 86first strand
Strand 2
B
122 132anti-parallel
Strand 3
B
135 146anti-parallel
Strand 4
B
151 157anti-parallel
Strand 5
B
110 115anti-parallel
Strand 6
B
102 106anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 86first strand
Strand 2
B
122 132anti-parallel
Strand 3
B
186 189parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
122 131anti-parallel
Strand 3
A
136 146anti-parallel
Strand 4
A
151 157anti-parallel
Strand 5
A
110 115anti-parallel
Strand 6
A
102 106anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
122 131anti-parallel
Strand 3
A
186 189parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il