Analysis of interatomic Contacts of Structural Units in PDB entry:
4OPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OPF entry

There is 1 chain in PDB entry 4OPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 6120GLY 6544
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4OPF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6137 6148Right-handed alpha
Helix 2
2
A
6177 6182Right-handed 310
Helix 3
3
A
6184 6191Right-handed alpha
Helix 4
4
A
6192 6210Right-handed alpha
Helix 5
5
A
6212 6216Right-handed 310
Helix 6
6
A
6251 6262Right-handed alpha
Helix 7
7
A
6272 6274Right-handed 310
Helix 8
8
A
6275 6290Right-handed alpha
Helix 9
9
A
6349 6356Right-handed alpha
Helix 10
10
A
6381 6397Right-handed alpha
Helix 11
11
A
6399 6403Right-handed 310
Helix 12
12
A
6413 6429Right-handed alpha
Helix 13
13
A
6441 6446Right-handed alpha
Helix 14
14
A
6448 6450Right-handed 310
Helix 15
15
A
6451 6467Right-handed alpha
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There are 2 sheets in PDB entry 4OPF. Click on sheet of interest to get list of strands forming it: A, B,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6267 6270first strand
Strand 2
A
6221 6226parallel
Strand 3
A
6295 6302parallel
Strand 4
A
6340 6348anti-parallel
Strand 5
A
6123 6131anti-parallel
Strand 6
A
6361 6370anti-parallel
Strand 7
A
6515 6522anti-parallel
Strand 8
A
6504 6510anti-parallel
Strand 9
A
6405 6407parallel
Strand 10
A
6436 6439parallel
Strand 11
A
6489 6490parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6468 6469first strand
Strand 2
A
6496 6497anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il