Analysis of interatomic Contacts of Structural Units in PDB entry:
4OQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OQD entry

There are 4 chains in PDB entry 4OQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 12ALA 250
B
 PRO 10GLY 249
C
 GLY 9GLY 249
D
 PRO 10GLY 249
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 4OQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 29Right-handed alpha
Helix 2
2
A
32 48Right-handed alpha
Helix 3
3
A
62 69Right-handed alpha
Helix 4
4
A
81 92Right-handed alpha
Helix 5
5
A
119 124Right-handed 310
Helix 6
6
A
125 139Right-handed alpha
Helix 7
7
A
154 158Right-handed 310
Helix 8
8
A
216 227Right-handed alpha
Helix 9
9
B
15 29Right-handed alpha
Helix 10
10
B
32 48Right-handed alpha
Helix 11
11
B
62 69Right-handed alpha
Helix 12
12
B
81 92Right-handed alpha
Helix 13
13
B
119 124Right-handed 310
Helix 14
14
B
126 140Right-handed alpha
Helix 15
15
B
154 158Right-handed 310
Helix 16
16
B
216 227Right-handed alpha
Helix 17
17
C
15 29Right-handed alpha
Helix 18
18
C
32 48Right-handed alpha
Helix 19
19
C
62 69Right-handed alpha
Helix 20
20
C
81 92Right-handed alpha
Helix 21
21
C
119 124Right-handed 310
Helix 22
22
C
126 139Right-handed alpha
Helix 23
23
C
154 158Right-handed 310
Helix 24
24
C
216 227Right-handed alpha
Helix 25
25
D
15 29Right-handed alpha
Helix 26
26
D
32 46Right-handed alpha
Helix 27
27
D
62 69Right-handed alpha
Helix 28
28
D
81 92Right-handed alpha
Helix 29
29
D
119 124Right-handed 310
Helix 30
30
D
126 140Right-handed alpha
Helix 31
31
D
154 158Right-handed 310
Helix 32
32
D
216 227Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4OQD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 99first strand
Strand 2
A
74 79parallel
Strand 3
A
53 57parallel
Strand 4
A
111 116parallel
Strand 5
A
141 149parallel
Strand 6
A
243 248anti-parallel
Strand 7
A
229 234anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 170first strand
Strand 2
A
173 184anti-parallel
Strand 3
A
187 198anti-parallel
Strand 4
A
202 213anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 99first strand
Strand 2
B
74 79parallel
Strand 3
B
53 57parallel
Strand 4
B
111 116parallel
Strand 5
B
141 149parallel
Strand 6
B
243 247anti-parallel
Strand 7
B
230 234anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 170first strand
Strand 2
B
173 184anti-parallel
Strand 3
B
187 198anti-parallel
Strand 4
B
202 213anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
96 99first strand
Strand 2
C
74 79parallel
Strand 3
C
53 57parallel
Strand 4
C
111 116parallel
Strand 5
C
141 149parallel
Strand 6
C
243 248anti-parallel
Strand 7
C
229 234anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 170first strand
Strand 2
C
173 184anti-parallel
Strand 3
C
187 198anti-parallel
Strand 4
C
202 213anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
96 99first strand
Strand 2
D
74 79parallel
Strand 3
D
53 57parallel
Strand 4
D
111 116parallel
Strand 5
D
141 149parallel
Strand 6
D
243 248anti-parallel
Strand 7
D
229 234anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
163 170first strand
Strand 2
D
173 183anti-parallel
Strand 3
D
187 198anti-parallel
Strand 4
D
202 213anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il