Analysis of interatomic Contacts of Structural Units in PDB entry:
4OQJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OQJ entry

There is 1 chain in PDB entry 4OQJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 15PRO 705
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 4OQJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 44Right-handed alpha
Helix 2
2
A
53 60Right-handed alpha
Helix 3
3
A
63 69Right-handed alpha
Helix 4
4
A
93 100Right-handed alpha
Helix 5
5
A
101 119Right-handed alpha
Helix 6
6
A
138 143Right-handed alpha
Helix 7
7
A
145 151Right-handed alpha
Helix 8
8
A
153 165Right-handed alpha
Helix 9
9
A
167 178Right-handed alpha
Helix 10
10
A
188 190Right-handed 310
Helix 11
11
A
191 207Right-handed alpha
Helix 12
12
A
265 272Right-handed alpha
Helix 13
13
A
298 314Right-handed alpha
Helix 14
14
A
316 320Right-handed 310
Helix 15
15
A
332 346Right-handed alpha
Helix 16
16
A
362 367Right-handed alpha
Helix 17
17
A
369 371Right-handed 310
Helix 18
18
A
372 388Right-handed alpha
Helix 19
19
A
404 408Right-handed 310
Helix 20
20
A
470 488Right-handed alpha
Helix 21
21
A
492 503Right-handed alpha
Helix 22
22
A
517 528Right-handed alpha
Helix 23
23
A
553 564Right-handed alpha
Helix 24
24
A
564 579Right-handed alpha
Helix 25
25
A
581 588Right-handed alpha
Helix 26
26
A
590 608Right-handed alpha
Helix 27
27
A
623 633Right-handed alpha
Helix 28
28
A
656 671Right-handed alpha
Helix 29
29
A
676 682Right-handed alpha
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There are 6 sheets in PDB entry 4OQJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
129 135parallel
Strand 3
A
211 218parallel
Strand 4
A
256 264anti-parallel
Strand 5
A
20 28anti-parallel
Strand 6
A
277 286anti-parallel
Strand 7
A
438 445anti-parallel
Strand 8
A
427 433anti-parallel
Strand 9
A
322 324parallel
Strand 10
A
357 360parallel
Strand 11
A
410 412parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
75 76anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 73first strand
Strand 2
A
227 228anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 390first strand
Strand 2
A
417 418anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 468first strand
Strand 2
A
509 515anti-parallel
Strand 3
A
533 536anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
614 615first strand
Strand 2
A
544 546parallel
Strand 3
A
645 647parallel
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