Analysis of interatomic Contacts of Structural Units in PDB entry:
4OQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OQQ entry

There are 2 chains in PDB entry 4OQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 59ASP 312
B
 GLU 59ASP 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 4OQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 73Right-handed alpha
Helix 2
2
A
86 106Right-handed alpha
Helix 3
3
A
117 127Right-handed alpha
Helix 4
4
A
152 164Right-handed alpha
Helix 5
5
A
179 188Right-handed alpha
Helix 6
6
A
189 202Right-handed alpha
Helix 7
7
A
216 220Right-handed 310
Helix 8
8
A
225 236Right-handed alpha
Helix 9
9
A
253 258Right-handed alpha
Helix 10
10
A
264 269Right-handed alpha
Helix 11
11
A
280 282Right-handed 310
Helix 12
12
A
283 293Right-handed alpha
Helix 13
13
A
303 312Right-handed alpha
Helix 14
14
B
60 73Right-handed alpha
Helix 15
15
B
86 106Right-handed alpha
Helix 16
16
B
117 127Right-handed alpha
Helix 17
17
B
152 164Right-handed alpha
Helix 18
18
B
179 189Right-handed alpha
Helix 19
19
B
189 202Right-handed alpha
Helix 20
20
B
216 220Right-handed 310
Helix 21
21
B
225 236Right-handed alpha
Helix 22
22
B
253 258Right-handed alpha
Helix 23
23
B
264 269Right-handed alpha
Helix 24
24
B
280 282Right-handed 310
Helix 25
25
B
283 293Right-handed alpha
Helix 26
26
B
303 311Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4OQQ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 80first strand
Strand 2
A
298 302parallel
Strand 3
A
273 277parallel
Strand 4
A
204 207parallel
Strand 5
A
111 114parallel
Strand 6
A
136 139parallel
Strand 7
A
168 169parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 240first strand
Strand 2
A
243 245anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 80first strand
Strand 2
B
298 302parallel
Strand 3
B
273 277parallel
Strand 4
B
204 207parallel
Strand 5
B
111 114parallel
Strand 6
B
136 139parallel
Strand 7
B
168 169parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 240first strand
Strand 2
B
243 245anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il