Analysis of interatomic Contacts of Structural Units in PDB entry:
4OQY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OQY entry

There are 2 chains in PDB entry 4OQY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3LYS 286
B
 LYS 3PRO 288
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 4OQY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
35 38Right-handed 310
Helix 3
3
A
39 45Right-handed alpha
Helix 4
4
A
52 59Right-handed alpha
Helix 5
5
A
69 78Right-handed alpha
Helix 6
6
A
79 84Right-handed 310
Helix 7
7
A
96 110Right-handed alpha
Helix 8
8
A
122 126Right-handed 310
Helix 9
9
A
138 150Right-handed alpha
Helix 10
10
A
162 193Right-handed alpha
Helix 11
11
A
196 208Right-handed alpha
Helix 12
12
A
209 215Right-handed alpha
Helix 13
13
A
233 252Right-handed alpha
Helix 14
14
A
255 271Right-handed alpha
Helix 15
15
A
277 279Right-handed 310
Helix 16
16
A
280 286Right-handed alpha
Helix 17
17
B
12 25Right-handed alpha
Helix 18
18
B
35 38Right-handed 310
Helix 19
19
B
39 45Right-handed alpha
Helix 20
20
B
52 59Right-handed alpha
Helix 21
21
B
69 78Right-handed alpha
Helix 22
22
B
79 84Right-handed 310
Helix 23
23
B
96 110Right-handed alpha
Helix 24
24
B
122 126Right-handed 310
Helix 25
25
B
138 150Right-handed alpha
Helix 26
26
B
162 193Right-handed alpha
Helix 27
27
B
196 208Right-handed alpha
Helix 28
28
B
209 218Right-handed alpha
Helix 29
29
B
233 252Right-handed alpha
Helix 30
30
B
255 271Right-handed alpha
Helix 31
31
B
277 279Right-handed 310
Helix 32
32
B
280 286Right-handed alpha
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There are 2 sheets in PDB entry 4OQY. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
29 32parallel
Strand 3
A
6 9parallel
Strand 4
A
62 65parallel
Strand 5
A
88 91parallel
Strand 6
A
113 119parallel
Strand 7
A
132 136anti-parallel
Strand 8
A
154 157parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 49first strand
Strand 2
B
29 32parallel
Strand 3
B
6 9parallel
Strand 4
B
62 65parallel
Strand 5
B
88 91parallel
Strand 6
B
113 119parallel
Strand 7
B
132 136anti-parallel
Strand 8
B
154 157parallel
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