Analysis of interatomic Contacts of Structural Units in PDB entry:
4OT1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OT1 entry

There are 3 chains in PDB entry 4OT1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 119LYS 437
H
 GLN 1LYS 232
L
 GLN 1CYS 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4OT1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
386 390Right-handed 310
Helix 2
2
A
392 408Right-handed alpha
Helix 3
3
H
28 30Right-handed 310
Helix 4
4
H
74 76Right-handed 310
Helix 5
5
H
87 91Right-handed 310
Helix 6
6
H
174 176Right-handed 310
Helix 7
7
H
205 207Right-handed 310
Helix 8
8
H
219 222Right-handed 310
Helix 9
9
L
28 32Right-handed 310
Helix 10
10
L
80 84Right-handed 310
Helix 11
11
L
124 130Right-handed alpha
Helix 12
12
L
184 190Right-handed alpha
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There are 13 sheets in PDB entry 4OT1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 377first strand
Strand 2
A
363 367anti-parallel
Strand 3
A
346 360anti-parallel
Strand 4
A
122 131anti-parallel
Strand 5
A
428 436anti-parallel
Strand 6
A
412 422anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 6first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
125 129parallel
Strand 3
H
92 102anti-parallel
Strand 4
H
32 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
125 129parallel
Strand 3
H
92 102anti-parallel
Strand 4
H
118 121anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
138 142first strand
Strand 2
H
153 163anti-parallel
Strand 3
H
194 203anti-parallel
Strand 4
H
182 183anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
149 150first strand
Strand 2
H
153 163anti-parallel
Strand 3
H
194 203anti-parallel
Strand 4
H
187 188anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
169 172first strand
Strand 2
H
212 218anti-parallel
Strand 3
H
223 229anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
104 108parallel
Strand 3
L
85 93anti-parallel
Strand 4
L
35 39anti-parallel
Strand 5
L
45 49anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
104 108parallel
Strand 3
L
85 93anti-parallel
Strand 4
L
97 100anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 23first strand
Strand 2
L
71 76anti-parallel
Strand 3
L
63 68anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
117 121first strand
Strand 2
L
133 142anti-parallel
Strand 3
L
175 183anti-parallel
Strand 4
L
162 164anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
117 121first strand
Strand 2
L
133 142anti-parallel
Strand 3
L
175 183anti-parallel
Strand 4
L
168 169anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
156 158first strand
Strand 2
L
148 153anti-parallel
Strand 3
L
194 200anti-parallel
Strand 4
L
203 209anti-parallel
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