Analysis of interatomic Contacts of Structural Units in PDB entry:
4OTE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OTE entry

There are 4 chains in PDB entry 4OTE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 28PHE 265
B
 LYS 26PHE 265
A
 MSE 301MSE 301
B
 MSE 301MSE 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 4OTE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 47Right-handed alpha
Helix 2
2
A
47 54Right-handed alpha
Helix 3
3
A
67 76Right-handed alpha
Helix 4
4
A
86 97Right-handed alpha
Helix 5
5
A
120 124Right-handed 310
Helix 6
6
A
135 149Right-handed alpha
Helix 7
7
A
162 166Right-handed 310
Helix 8
8
A
179 190Right-handed 310
Helix 9
9
A
196 201Right-handed alpha
Helix 10
10
A
206 210Right-handed alpha
Helix 11
11
A
218 221Right-handed 310
Helix 12
12
A
230 232Right-handed 310
Helix 13
13
A
234 245Right-handed alpha
Helix 14
14
A
246 258Right-handed alpha
Helix 15
15
B
39 47Right-handed alpha
Helix 16
16
B
47 54Right-handed alpha
Helix 17
17
B
67 76Right-handed alpha
Helix 18
18
B
86 97Right-handed alpha
Helix 19
19
B
120 124Right-handed 310
Helix 20
20
B
135 149Right-handed alpha
Helix 21
21
B
162 166Right-handed 310
Helix 22
22
B
179 190Right-handed 310
Helix 23
23
B
196 201Right-handed alpha
Helix 24
24
B
206 210Right-handed alpha
Helix 25
25
B
218 221Right-handed 310
Helix 26
26
B
230 232Right-handed 310
Helix 27
27
B
234 245Right-handed alpha
Helix 28
28
B
246 258Right-handed alpha
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There are 4 sheets in PDB entry 4OTE. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 63first strand
Strand 2
A
30 36parallel
Strand 3
A
80 85parallel
Strand 4
A
223 228anti-parallel
Strand 5
A
100 108anti-parallel
Strand 6
A
262 263anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 178first strand
Strand 2
A
129 133parallel
Strand 3
A
192 195parallel
Strand 4
A
112 114anti-parallel
Strand 5
A
211 214anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 62first strand
Strand 2
B
30 35parallel
Strand 3
B
80 85parallel
Strand 4
B
223 228anti-parallel
Strand 5
B
100 108anti-parallel
Strand 6
B
262 263anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 178first strand
Strand 2
B
129 133parallel
Strand 3
B
192 195parallel
Strand 4
B
112 114anti-parallel
Strand 5
B
211 214anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il