Analysis of interatomic Contacts of Structural Units in PDB entry:
4OVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OVD entry

There is 1 chain in PDB entry 4OVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 61PRO 571
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 4OVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
170 175Right-handed alpha
Helix 2
2
A
185 191Right-handed alpha
Helix 3
3
A
191 196Right-handed alpha
Helix 4
4
A
234 253Right-handed alpha
Helix 5
5
A
288 293Right-handed 310
Helix 6
6
A
294 299Right-handed alpha
Helix 7
7
A
303 306Right-handed 310
Helix 8
8
A
307 318Right-handed alpha
Helix 9
9
A
354 361Right-handed alpha
Helix 10
10
A
362 373Right-handed alpha
Helix 11
11
A
375 386Right-handed alpha
Helix 12
12
A
406 410Right-handed 310
Helix 13
13
A
413 419Right-handed alpha
Helix 14
14
A
427 440Right-handed alpha
Helix 15
15
A
467 485Right-handed alpha
Helix 16
16
A
487 491Right-handed 310
Helix 17
17
A
530 533Right-handed 310
Helix 18
18
A
547 550Right-handed 310
Helix 19
19
A
551 567Right-handed alpha
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There are 6 sheets in PDB entry 4OVD. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
200 202anti-parallel
Strand 3
A
220 221anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 163first strand
Strand 2
A
79 84anti-parallel
Strand 3
A
72 73anti-parallel
Strand 4
A
229 231parallel
Strand 5
A
450 453anti-parallel
Strand 6
A
456 457anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 276first strand
Strand 2
A
258 263anti-parallel
Strand 3
A
535 542anti-parallel
Strand 4
A
520 528anti-parallel
Strand 5
A
497 505anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
350 353anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 335first strand
Strand 2
A
338 341anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
443 444first strand
Strand 2
A
463 464anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il