Analysis of interatomic Contacts of Structural Units in PDB entry:
4OVK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OVK entry

There is 1 chain in PDB entry 4OVK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 38PHE 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 4OVK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 75Right-handed alpha
Helix 2
AA2
A
84 93Right-handed alpha
Helix 3
AA3
A
95 100Right-handed alpha
Helix 4
AA4
A
101 106Right-handed 310
Helix 5
AA5
A
118 126Right-handed alpha
Helix 6
AA6
A
136 146Right-handed alpha
Helix 7
AA7
A
157 173Right-handed alpha
Helix 8
AA8
A
174 196Right-handed alpha
Helix 9
AA9
A
197 200Right-handed 310
Helix 10
AB1
A
221 230Right-handed alpha
Helix 11
AB2
A
247 255Right-handed alpha
Helix 12
AB3
A
268 274Right-handed alpha
Helix 13
AB4
A
285 290Right-handed alpha
Helix 14
AB5
A
309 322Right-handed alpha
Helix 15
AB6
A
330 344Right-handed alpha
Helix 16
AB7
A
348 357Right-handed alpha
Helix 17
AB8
A
357 362Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 4OVK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
49 53anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 82first strand
Strand 2
A
59 61parallel
Strand 3
A
129 133parallel
Strand 4
A
150 153parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
205 209parallel
Strand 3
A
258 261parallel
Strand 4
A
293 295parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 217first strand
Strand 2
A
243 245anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il