Analysis of interatomic Contacts of Structural Units in PDB entry:
4OVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OVP entry

There are 2 chains in PDB entry 4OVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 6ARG 328
B
 THR 29LYS 330
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 4OVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 58Right-handed alpha
Helix 2
AA2
A
74 85Right-handed alpha
Helix 3
AA3
A
94 98Right-handed 310
Helix 4
AA4
A
104 110Right-handed 310
Helix 5
AA5
A
116 126Right-handed alpha
Helix 6
AA6
A
129 141Right-handed alpha
Helix 7
AA7
A
163 168Right-handed alpha
Helix 8
AA8
A
177 187Right-handed alpha
Helix 9
AA9
A
195 197Right-handed 310
Helix 10
AB1
A
198 205Right-handed alpha
Helix 11
AB2
A
214 221Right-handed alpha
Helix 12
AB3
A
222 226Right-handed 310
Helix 13
AB4
A
246 252Right-handed alpha
Helix 14
AB5
A
253 289Right-handed alpha
Helix 15
AB6
A
301 318Right-handed alpha
Helix 16
AB7
A
320 328Right-handed alpha
Helix 17
AB8
B
41 58Right-handed alpha
Helix 18
AB9
B
74 85Right-handed alpha
Helix 19
AC1
B
94 98Right-handed 310
Helix 20
AC2
B
104 110Right-handed 310
Helix 21
AC3
B
116 126Right-handed alpha
Helix 22
AC4
B
129 141Right-handed alpha
Helix 23
AC5
B
163 168Right-handed alpha
Helix 24
AC6
B
177 187Right-handed alpha
Helix 25
AC7
B
195 197Right-handed 310
Helix 26
AC8
B
198 205Right-handed alpha
Helix 27
AC9
B
214 221Right-handed alpha
Helix 28
AD1
B
222 226Right-handed 310
Helix 29
AD2
B
246 252Right-handed alpha
Helix 30
AD3
B
253 289Right-handed alpha
Helix 31
AD4
B
299 318Right-handed alpha
Helix 32
AD5
B
320 329Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4OVP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 34first strand
Strand 2
A
62 67parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
229 245anti-parallel
Strand 3
A
142 157anti-parallel
Strand 4
A
210 213anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
229 245anti-parallel
Strand 3
A
293 295parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
190 192parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 34first strand
Strand 2
B
63 67parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
229 245anti-parallel
Strand 3
B
142 157anti-parallel
Strand 4
B
210 213anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
229 245anti-parallel
Strand 3
B
293 295parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 174first strand
Strand 2
B
190 193parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il