Analysis of interatomic Contacts of Structural Units in PDB entry:
4OXI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OXI entry

There is 1 chain in PDB entry 4OXI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 15GLN 550
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 4OXI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 43Right-handed alpha
Helix 2
AA2
A
58 76Right-handed alpha
Helix 3
AA3
A
87 100Right-handed alpha
Helix 4
AA4
A
112 123Right-handed alpha
Helix 5
AA5
A
131 133Right-handed 310
Helix 6
AA6
A
134 145Right-handed alpha
Helix 7
AA7
A
159 166Right-handed alpha
Helix 8
AA8
A
180 184Right-handed 310
Helix 9
AA9
A
216 230Right-handed alpha
Helix 10
AB1
A
247 260Right-handed alpha
Helix 11
AB2
A
267 271Right-handed 310
Helix 12
AB3
A
273 282Right-handed alpha
Helix 13
AB4
A
290 299Right-handed alpha
Helix 14
AB5
A
321 333Right-handed alpha
Helix 15
AB6
A
342 346Right-handed 310
Helix 16
AB7
A
355 359Right-handed 310
Helix 17
AB8
A
411 418Right-handed alpha
Helix 18
AB9
A
460 472Right-handed alpha
Helix 19
AC1
A
503 512Right-handed alpha
Helix 20
AC2
A
539 549Right-handed alpha
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There are 8 sheets in PDB entry 4OXI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
47 51anti-parallel
Strand 3
A
262 265parallel
Strand 4
A
237 240parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
79 82parallel
Strand 3
A
127 129parallel
Strand 4
A
150 153parallel
Strand 5
A
170 173parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 202first strand
Strand 2
A
210 215anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 288first strand
Strand 2
A
312 316parallel
Strand 3
A
336 340parallel
Strand 4
A
350 353anti-parallel
Strand 5
A
367 368anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 385first strand
Strand 2
A
374 377anti-parallel
Strand 3
A
394 399anti-parallel
Strand 4
A
425 437anti-parallel
Strand 5
A
419 422anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 385first strand
Strand 2
A
374 377anti-parallel
Strand 3
A
394 399anti-parallel
Strand 4
A
425 437anti-parallel
Strand 5
A
440 446anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 453first strand
Strand 2
A
456 459anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 480first strand
Strand 2
A
492 496anti-parallel
Strand 3
A
523 526parallel
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