Analysis of interatomic Contacts of Structural Units in PDB entry:
4OXQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OXQ entry

There are 2 chains in PDB entry 4OXQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 29GLN 306
B
 LYS 29GLN 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 4OXQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 48Right-handed alpha
Helix 2
AA2
A
69 79Right-handed alpha
Helix 3
AA3
A
94 103Right-handed alpha
Helix 4
AA4
A
130 134Right-handed 310
Helix 5
AA5
A
137 140Right-handed 310
Helix 6
AA6
A
141 160Right-handed alpha
Helix 7
AA7
A
163 186Right-handed alpha
Helix 8
AA8
A
193 196Right-handed 310
Helix 9
AA9
A
206 214Right-handed alpha
Helix 10
AB1
A
230 244Right-handed alpha
Helix 11
AB2
A
257 268Right-handed alpha
Helix 12
AB3
A
289 304Right-handed alpha
Helix 13
AB4
B
36 48Right-handed alpha
Helix 14
AB5
B
69 79Right-handed alpha
Helix 15
AB6
B
91 93Right-handed 310
Helix 16
AB7
B
94 103Right-handed alpha
Helix 17
AB8
B
130 134Right-handed 310
Helix 18
AB9
B
137 140Right-handed 310
Helix 19
AC1
B
141 160Right-handed alpha
Helix 20
AC2
B
163 186Right-handed alpha
Helix 21
AC3
B
193 196Right-handed 310
Helix 22
AC4
B
206 214Right-handed alpha
Helix 23
AC5
B
230 244Right-handed alpha
Helix 24
AC6
B
257 268Right-handed alpha
Helix 25
AC7
B
289 304Right-handed alpha
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There are 6 sheets in PDB entry 4OXQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 55first strand
Strand 2
A
30 34parallel
Strand 3
A
81 84parallel
Strand 4
A
112 114parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 203first strand
Strand 2
A
216 221parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 252first strand
Strand 2
A
270 275parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 55first strand
Strand 2
B
30 34parallel
Strand 3
B
81 84parallel
Strand 4
B
112 114parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 203first strand
Strand 2
B
216 221parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
248 252first strand
Strand 2
B
270 275parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il