Analysis of interatomic Contacts of Structural Units in PDB entry:
4OYH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4OYH entry

There are 5 chains in PDB entry 4OYH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 10LYS 172
B
 PRO 9SER 175
C
 PHE 10LYS 172
D
 PHE 10LYS 172
E
 PHE 10GLU 174
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4OYH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 36Right-handed alpha
Helix 2
AA2
A
64 68Right-handed alpha
Helix 3
AA3
A
90 101Right-handed alpha
Helix 4
AA4
A
126 131Right-handed alpha
Helix 5
AA5
A
143 147Right-handed 310
Helix 6
AA6
A
160 172Right-handed alpha
Helix 7
AA7
B
22 36Right-handed alpha
Helix 8
AA8
B
64 68Right-handed alpha
Helix 9
AA9
B
90 101Right-handed alpha
Helix 10
AB1
B
126 131Right-handed alpha
Helix 11
AB2
B
143 147Right-handed 310
Helix 12
AB3
B
160 173Right-handed alpha
Helix 13
AB4
C
22 37Right-handed alpha
Helix 14
AB5
C
64 68Right-handed alpha
Helix 15
AB6
C
90 101Right-handed alpha
Helix 16
AB7
C
126 131Right-handed alpha
Helix 17
AB8
C
143 147Right-handed 310
Helix 18
AB9
C
160 171Right-handed alpha
Helix 19
AC1
D
22 37Right-handed alpha
Helix 20
AC2
D
64 68Right-handed alpha
Helix 21
AC3
D
90 101Right-handed alpha
Helix 22
AC4
D
126 131Right-handed alpha
Helix 23
AC5
D
143 147Right-handed 310
Helix 24
AC6
D
160 171Right-handed alpha
Helix 25
AC7
E
22 37Right-handed alpha
Helix 26
AC8
E
64 68Right-handed alpha
Helix 27
AC9
E
90 101Right-handed alpha
Helix 28
AD1
E
126 131Right-handed alpha
Helix 29
AD2
E
143 147Right-handed 310
Helix 30
AD3
E
160 172Right-handed alpha
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There are 4 sheets in PDB entry 4OYH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
A
105 109parallel
Strand 3
A
12 16parallel
Strand 4
A
118 122parallel
Strand 5
A
136 141parallel
Strand 6
A
155 156parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 77first strand
Strand 2
A
80 85anti-parallel
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There are 16 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 157first strand
Strand 2
B
136 141parallel
Strand 3
B
118 122parallel
Strand 4
B
12 16parallel
Strand 5
B
105 109parallel
Strand 6
B
41 46parallel
Strand 7
E
72 77parallel
Strand 8
E
80 86anti-parallel
Strand 9
B
80 86anti-parallel
Strand 10
B
72 77anti-parallel
Strand 11
E
41 46parallel
Strand 12
E
105 109parallel
Strand 13
E
12 16parallel
Strand 14
E
118 122parallel
Strand 15
E
136 141parallel
Strand 16
E
155 157parallel
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There are 16 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
155 157first strand
Strand 2
C
136 141parallel
Strand 3
C
118 122parallel
Strand 4
C
12 16parallel
Strand 5
C
105 109parallel
Strand 6
C
41 46parallel
Strand 7
D
72 77parallel
Strand 8
D
80 86anti-parallel
Strand 9
C
80 86anti-parallel
Strand 10
C
72 76anti-parallel
Strand 11
D
41 46parallel
Strand 12
D
105 109parallel
Strand 13
D
12 17parallel
Strand 14
D
118 122parallel
Strand 15
D
136 141parallel
Strand 16
D
155 157parallel
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