Analysis of interatomic Contacts of Structural Units in PDB entry:
4OYJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4OYJ entry

There are 13 chains in PDB entry 4OYJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	GLU 183
B	PRO 2	GLU 183
C	GLU 4	GLU 183
D	MET 1	VAL 182
E	MET 1	GLU 183
F	GLU 4	GLU 183
G	MET 1	GLU 183
H	GLU 5	VAL 182
I	GLU 5	VAL 182
J	GLU 5	GLU 183
K	GLU 5	VAL 182
L	PHE 10	GLU 183
M	GLU 5	GLU 183

There are130 helices in PDB entry 4OYJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	24	Right-handed alpha
Helix 2	AA2	A	30	39	Right-handed alpha
Helix 3	AA3	A	43	48	Right-handed alpha
Helix 4	AA4	A	52	61	Right-handed alpha
Helix 5	AA5	A	64	88	Right-handed alpha
Helix 6	AA6	A	102	108	Right-handed alpha
Helix 7	AA7	A	109	112	Right-handed 310
Helix 8	AA8	A	114	123	Right-handed alpha
Helix 9	AA9	A	142	166	Right-handed alpha
Helix 10	AB1	A	170	179	Right-handed alpha
Helix 11	AB2	B	3	24	Right-handed alpha
Helix 12	AB3	B	30	39	Right-handed alpha
Helix 13	AB4	B	43	48	Right-handed alpha
Helix 14	AB5	B	52	61	Right-handed alpha
Helix 15	AB6	B	64	88	Right-handed alpha
Helix 16	AB7	B	102	108	Right-handed alpha
Helix 17	AB8	B	109	112	Right-handed 310
Helix 18	AB9	B	114	123	Right-handed alpha
Helix 19	AC1	B	142	165	Right-handed alpha
Helix 20	AC2	B	170	179	Right-handed alpha
Helix 21	AC3	C	5	24	Right-handed alpha
Helix 22	AC4	C	30	39	Right-handed alpha
Helix 23	AC5	C	43	48	Right-handed alpha
Helix 24	AC6	C	52	61	Right-handed alpha
Helix 25	AC7	C	64	88	Right-handed alpha
Helix 26	AC8	C	102	108	Right-handed alpha
Helix 27	AC9	C	109	112	Right-handed 310
Helix 28	AD1	C	114	123	Right-handed alpha
Helix 29	AD2	C	142	165	Right-handed alpha
Helix 30	AD3	C	170	179	Right-handed alpha
Helix 31	AD4	D	3	24	Right-handed alpha
Helix 32	AD5	D	30	39	Right-handed alpha
Helix 33	AD6	D	43	48	Right-handed alpha
Helix 34	AD7	D	52	61	Right-handed alpha
Helix 35	AD8	D	64	88	Right-handed alpha
Helix 36	AD9	D	102	108	Right-handed alpha
Helix 37	AE1	D	109	112	Right-handed 310
Helix 38	AE2	D	114	123	Right-handed alpha
Helix 39	AE3	D	142	165	Right-handed alpha
Helix 40	AE4	D	170	179	Right-handed alpha
Helix 41	AE5	E	3	24	Right-handed alpha
Helix 42	AE6	E	30	39	Right-handed alpha
Helix 43	AE7	E	43	48	Right-handed alpha
Helix 44	AE8	E	52	61	Right-handed alpha
Helix 45	AE9	E	64	88	Right-handed alpha
Helix 46	AF1	E	102	108	Right-handed alpha
Helix 47	AF2	E	109	112	Right-handed 310
Helix 48	AF3	E	114	123	Right-handed alpha
Helix 49	AF4	E	142	166	Right-handed alpha
Helix 50	AF5	E	170	179	Right-handed alpha
Helix 51	AF6	F	6	24	Right-handed alpha
Helix 52	AF7	F	30	39	Right-handed alpha
Helix 53	AF8	F	43	48	Right-handed alpha
Helix 54	AF9	F	52	61	Right-handed alpha
Helix 55	AG1	F	64	88	Right-handed alpha
Helix 56	AG2	F	102	108	Right-handed alpha
Helix 57	AG3	F	109	112	Right-handed 310
Helix 58	AG4	F	114	123	Right-handed alpha
Helix 59	AG5	F	142	165	Right-handed alpha
Helix 60	AG6	F	170	179	Right-handed alpha
Helix 61	AG7	G	3	24	Right-handed alpha
Helix 62	AG8	G	30	39	Right-handed alpha
Helix 63	AG9	G	43	48	Right-handed alpha
Helix 64	AH1	G	52	61	Right-handed alpha
Helix 65	AH2	G	64	88	Right-handed alpha
Helix 66	AH3	G	102	108	Right-handed alpha
Helix 67	AH4	G	109	112	Right-handed 310
Helix 68	AH5	G	114	123	Right-handed alpha
Helix 69	AH6	G	142	165	Right-handed alpha
Helix 70	AH7	G	170	179	Right-handed alpha
Helix 71	AH8	H	6	24	Right-handed alpha
Helix 72	AH9	H	30	39	Right-handed alpha
Helix 73	AI1	H	43	48	Right-handed alpha
Helix 74	AI2	H	52	61	Right-handed alpha
Helix 75	AI3	H	64	88	Right-handed alpha
Helix 76	AI4	H	102	108	Right-handed alpha
Helix 77	AI5	H	109	112	Right-handed 310
Helix 78	AI6	H	114	123	Right-handed alpha
Helix 79	AI7	H	142	165	Right-handed alpha
Helix 80	AI8	H	170	179	Right-handed alpha
Helix 81	AI9	I	6	24	Right-handed alpha
Helix 82	AJ1	I	30	39	Right-handed alpha
Helix 83	AJ2	I	43	48	Right-handed alpha
Helix 84	AJ3	I	52	61	Right-handed alpha
Helix 85	AJ4	I	64	88	Right-handed alpha
Helix 86	AJ5	I	102	108	Right-handed alpha
Helix 87	AJ6	I	109	112	Right-handed 310
Helix 88	AJ7	I	114	123	Right-handed alpha
Helix 89	AJ8	I	142	165	Right-handed alpha
Helix 90	AJ9	I	170	179	Right-handed alpha
Helix 91	AK1	J	6	24	Right-handed alpha
Helix 92	AK2	J	30	39	Right-handed alpha
Helix 93	AK3	J	43	48	Right-handed alpha
Helix 94	AK4	J	52	61	Right-handed alpha
Helix 95	AK5	J	64	88	Right-handed alpha
Helix 96	AK6	J	102	108	Right-handed alpha
Helix 97	AK7	J	109	112	Right-handed 310
Helix 98	AK8	J	114	123	Right-handed alpha
Helix 99	AK9	J	142	165	Right-handed alpha
Helix 100	AL1	J	170	179	Right-handed alpha
Helix 101	AL2	K	6	24	Right-handed alpha
Helix 102	AL3	K	30	39	Right-handed alpha
Helix 103	AL4	K	43	48	Right-handed alpha
Helix 104	AL5	K	52	61	Right-handed alpha
Helix 105	AL6	K	64	88	Right-handed alpha
Helix 106	AL7	K	102	108	Right-handed alpha
Helix 107	AL8	K	109	112	Right-handed 310
Helix 108	AL9	K	114	123	Right-handed alpha
Helix 109	AM1	K	142	165	Right-handed alpha
Helix 110	AM2	K	170	179	Right-handed alpha
Helix 111	AM3	L	11	24	Right-handed alpha
Helix 112	AM4	L	35	39	Right-handed alpha
Helix 113	AM5	L	43	48	Right-handed alpha
Helix 114	AM6	L	52	61	Right-handed alpha
Helix 115	AM7	L	64	88	Right-handed alpha
Helix 116	AM8	L	102	108	Right-handed alpha
Helix 117	AM9	L	109	112	Right-handed 310
Helix 118	AN1	L	114	123	Right-handed alpha
Helix 119	AN2	L	142	165	Right-handed alpha
Helix 120	AN3	L	170	179	Right-handed alpha
Helix 121	AN4	M	6	24	Right-handed alpha
Helix 122	AN5	M	30	39	Right-handed alpha
Helix 123	AN6	M	43	48	Right-handed alpha
Helix 124	AN7	M	52	61	Right-handed alpha
Helix 125	AN8	M	64	88	Right-handed alpha
Helix 126	AN9	M	102	108	Right-handed alpha
Helix 127	AO1	M	109	112	Right-handed 310
Helix 128	AO2	M	114	123	Right-handed alpha
Helix 129	AO3	M	142	166	Right-handed alpha
Helix 130	AO4	M	170	179	Right-handed alpha

There are 13 sheets in PDB entry 4OYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	99	first strand
Strand 2	A	131	133	anti-parallel
Strand 3	A	126	128	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	99	first strand
Strand 2	B	131	133	anti-parallel
Strand 3	B	126	128	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	99	first strand
Strand 2	C	131	133	anti-parallel
Strand 3	C	126	128	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	99	first strand
Strand 2	D	131	133	anti-parallel
Strand 3	D	126	128	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	99	first strand
Strand 2	E	131	133	anti-parallel
Strand 3	E	126	128	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	99	first strand
Strand 2	F	131	133	anti-parallel
Strand 3	F	126	128	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	97	99	first strand
Strand 2	G	131	133	anti-parallel
Strand 3	G	126	128	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	97	99	first strand
Strand 2	H	131	133	anti-parallel
Strand 3	H	126	128	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	97	99	first strand
Strand 2	I	131	133	anti-parallel
Strand 3	I	126	128	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	97	99	first strand
Strand 2	J	131	133	anti-parallel
Strand 3	J	126	128	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	97	99	first strand
Strand 2	K	131	133	anti-parallel
Strand 3	K	126	128	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	97	99	first strand
Strand 2	L	131	133	anti-parallel
Strand 3	L	126	128	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	97	99	first strand
Strand 2	M	131	133	anti-parallel
Strand 3	M	126	128	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4OYJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
4OYJ