Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 4OZC entry
There are 7 chains in PDB entry 4OZC
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
A
|
ASP 1 | ALA 20 |
A
|
ASP 22 | ALA 23 |
A
|
THR 25 | GLU 27 |
A
|
VAL 29 | PHE 30 |
A
|
GLN 32 | ALA 34 |
A
|
ASP 36 | VAL 39 |
A
|
GLY 41 | GLU 56 |
Back to top of page
There is 1
helix in PDB entry 4OZC. Click on helix number for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
| Helix 1 |
AA1 | A
| 22 |
37 | Right-handed alpha |
Back to top of page
There is
1 sheet (AA1) in PDB entry 4OZC.
There are 4
strands in AA1 sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
| Strand 1 |
A
| 13 |
19 | first strand |
| Strand 2 |
A
| 2 |
8 | anti-parallel |
| Strand 3 |
A
| 51 |
55 | parallel |
| Strand 4 |
A
| 42 |
46 | anti-parallel |
Back to top of page
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il