Analysis of interatomic Contacts of Structural Units in PDB entry:
4OZI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4OZI entry

There are 7 chains in PDB entry 4OZI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 1	GLU 181
B	SER 3	ALA 190
C	ILE 1	GLU 181
D	SER 3	ALA 190
E	LYS 3	PRO 217
F	MET 2	ALA 254
G	LYS 3	TYR 113

There are 21 helices in PDB entry 4OZI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	56	77	Right-handed alpha
Helix 2	AA2	B	54	64	Right-handed alpha
Helix 3	AA3	B	64	78	Right-handed alpha
Helix 4	AA4	B	78	87	Right-handed alpha
Helix 5	AA5	B	88	93	Right-handed 310
Helix 6	AA6	C	45	51	Right-handed 310
Helix 7	AA7	C	56	77	Right-handed alpha
Helix 8	AA8	D	53	64	Right-handed alpha
Helix 9	AA9	D	64	78	Right-handed alpha
Helix 10	AB1	D	78	87	Right-handed alpha
Helix 11	AB2	E	95	99	Right-handed 310
Helix 12	AB3	F	95	99	Right-handed 310
Helix 13	AB4	F	127	131	Right-handed 310
Helix 14	AB5	F	142	149	Right-handed alpha
Helix 15	AB6	F	209	214	Right-handed alpha
Helix 16	AB7	G	95	99	Right-handed 310
Helix 17	AB8	G	200	205	Right-handed alpha
Helix 18	AB9	H	95	99	Right-handed 310
Helix 19	AC1	H	127	131	Right-handed 310
Helix 20	AC2	H	142	149	Right-handed alpha
Helix 21	AC3	H	209	213	Right-handed alpha

There are 32 sheets in PDB entry 4OZI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	43	first strand
Strand 2	A	29	35	anti-parallel
Strand 3	A	19	26	anti-parallel
Strand 4	A	5	14	anti-parallel
Strand 5	B	8	18	anti-parallel
Strand 6	B	23	32	anti-parallel
Strand 7	B	36	41	anti-parallel
Strand 8	B	47	49	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	103	112	anti-parallel
Strand 3	A	145	153	anti-parallel
Strand 4	A	132	134	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	93	first strand
Strand 2	A	103	112	anti-parallel
Strand 3	A	145	153	anti-parallel
Strand 4	A	138	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	128	first strand
Strand 2	A	118	123	anti-parallel
Strand 3	A	161	166	anti-parallel
Strand 4	A	174	178	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	102	first strand
Strand 2	B	114	120	anti-parallel
Strand 3	B	155	162	anti-parallel
Strand 4	B	142	144	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	102	first strand
Strand 2	B	114	120	anti-parallel
Strand 3	B	155	162	anti-parallel
Strand 4	B	148	149	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	133	first strand
Strand 2	B	170	176	anti-parallel
Strand 3	B	186	189	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	43	first strand
Strand 2	C	29	35	anti-parallel
Strand 3	C	19	26	anti-parallel
Strand 4	C	5	14	anti-parallel
Strand 5	D	8	18	anti-parallel
Strand 6	D	23	31	anti-parallel
Strand 7	D	36	41	anti-parallel
Strand 8	D	47	49	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	93	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	145	153	anti-parallel
Strand 4	C	132	134	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	93	first strand
Strand 2	C	103	112	anti-parallel
Strand 3	C	145	153	anti-parallel
Strand 4	C	138	139	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	127	first strand
Strand 2	C	118	123	anti-parallel
Strand 3	C	161	166	anti-parallel
Strand 4	C	174	178	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	103	first strand
Strand 2	D	114	122	anti-parallel
Strand 3	D	155	162	anti-parallel
Strand 4	D	142	144	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	103	first strand
Strand 2	D	114	122	anti-parallel
Strand 3	D	155	162	anti-parallel
Strand 4	D	148	149	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	137	first strand
Strand 2	D	128	133	anti-parallel
Strand 3	D	171	176	anti-parallel
Strand 4	D	184	188	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	122	127	parallel
Strand 3	E	101	107	anti-parallel
Strand 4	E	38	44	anti-parallel
Strand 5	E	51	56	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	24	first strand
Strand 2	E	86	91	anti-parallel
Strand 3	E	77	79	anti-parallel
Strand 4	E	66	67	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	140	first strand
Strand 2	E	149	154	anti-parallel
Strand 3	E	185	194	anti-parallel
Strand 4	E	171	172	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	140	first strand
Strand 2	E	149	154	anti-parallel
Strand 3	E	185	194	anti-parallel
Strand 4	E	176	180	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	86	91	anti-parallel
Strand 4	F	76	79	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	14	first strand
Strand 2	F	120	125	parallel
Strand 3	F	101	106	anti-parallel
Strand 4	F	38	44	anti-parallel
Strand 5	F	51	57	anti-parallel
Strand 6	F	66	67	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	14	first strand
Strand 2	F	120	125	parallel
Strand 3	F	101	106	anti-parallel
Strand 4	F	115	116	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	139	first strand
Strand 2	F	151	161	anti-parallel
Strand 3	F	199	208	anti-parallel
Strand 4	F	181	183	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	139	first strand
Strand 2	F	151	161	anti-parallel
Strand 3	F	199	208	anti-parallel
Strand 4	F	188	189	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	175	177	first strand
Strand 2	F	166	172	anti-parallel
Strand 3	F	218	225	anti-parallel
Strand 4	F	245	251	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	122	127	parallel
Strand 3	G	101	107	anti-parallel
Strand 4	G	38	44	anti-parallel
Strand 5	G	51	56	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	24	first strand
Strand 2	G	86	91	anti-parallel
Strand 3	G	77	79	anti-parallel
Strand 4	G	66	67	anti-parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	170	172	first strand
Strand 2	G	185	194	anti-parallel
Strand 3	G	149	154	anti-parallel
Strand 4	G	136	142	anti-parallel
Strand 5	H	135	140	anti-parallel
Strand 6	H	151	161	anti-parallel
Strand 7	H	199	208	anti-parallel
Strand 8	H	181	183	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	176	180	first strand
Strand 2	G	185	194	anti-parallel
Strand 3	G	149	154	anti-parallel
Strand 4	G	136	142	anti-parallel
Strand 5	H	135	140	anti-parallel
Strand 6	H	151	161	anti-parallel
Strand 7	H	199	208	anti-parallel
Strand 8	H	188	189	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	86	91	anti-parallel
Strand 4	H	76	79	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	120	125	parallel
Strand 3	H	101	106	anti-parallel
Strand 4	H	39	44	anti-parallel
Strand 5	H	51	56	anti-parallel
Strand 6	H	66	67	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	120	125	parallel
Strand 3	H	101	106	anti-parallel
Strand 4	H	115	116	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	175	177	first strand
Strand 2	H	166	172	anti-parallel
Strand 3	H	218	225	anti-parallel
Strand 4	H	245	251	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4OZI

Analysis of interatomic Contacts of Structural Units in PDB entry:
4OZI