Analysis of interatomic Contacts of Structural Units in PDB entry:
4P0E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4P0E entry

There are 2 chains in PDB entry 4P0E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLU 190
B
 SER 3GLU 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 4P0E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 20Right-handed alpha
Helix 2
AA2
A
40 59Right-handed alpha
Helix 3
AA3
A
85 97Right-handed alpha
Helix 4
AA4
A
130 139Right-handed alpha
Helix 5
AA5
A
140 150Right-handed 310
Helix 6
AA6
A
154 158Right-handed 310
Helix 7
AA7
A
166 172Right-handed alpha
Helix 8
AA8
A
174 189Right-handed alpha
Helix 9
AA9
B
10 20Right-handed alpha
Helix 10
AB1
B
40 59Right-handed alpha
Helix 11
AB2
B
85 97Right-handed alpha
Helix 12
AB3
B
130 140Right-handed alpha
Helix 13
AB4
B
141 150Right-handed 310
Helix 14
AB5
B
154 158Right-handed 310
Helix 15
AB6
B
166 172Right-handed alpha
Helix 16
AB7
B
174 187Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 4P0E. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
4 6parallel
Strand 3
A
66 75parallel
Strand 4
A
100 110anti-parallel
Strand 5
A
115 126anti-parallel
Strand 6
A
160 165anti-parallel
Strand 7
B
160 165anti-parallel
Strand 8
B
115 126anti-parallel
Strand 9
B
100 110anti-parallel
Strand 10
B
66 75anti-parallel
Strand 11
B
4 7parallel
Strand 12
B
24 27parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
66 75anti-parallel
Strand 3
A
100 110anti-parallel
Strand 4
A
115 126anti-parallel
Strand 5
A
160 165anti-parallel
Strand 6
B
160 165anti-parallel
Strand 7
B
115 126anti-parallel
Strand 8
B
100 110anti-parallel
Strand 9
B
66 75anti-parallel
Strand 10
B
78 80anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il