Analysis of interatomic Contacts of Structural Units in PDB entry:
4P0T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4P0T entry

There are 2 chains in PDB entry 4P0T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 15SER 167
B
 THR 15ARG 170
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 4P0T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 37Right-handed alpha
Helix 2
AA2
A
74 86Right-handed alpha
Helix 3
AA3
A
87 88Right-handed 310
Helix 4
AA4
A
89 94Right-handed 310
Helix 5
AA5
A
110 124Right-handed alpha
Helix 6
AA6
A
135 154Right-handed alpha
Helix 7
AA7
A
161 166Right-handed alpha
Helix 8
AA8
B
24 37Right-handed alpha
Helix 9
AA9
B
74 86Right-handed alpha
Helix 10
AB1
B
87 88Right-handed 310
Helix 11
AB2
B
89 94Right-handed 310
Helix 12
AB3
B
110 124Right-handed alpha
Helix 13
AB4
B
135 154Right-handed alpha
Helix 14
AB5
B
161 163Right-handed 310
Helix 15
AB6
B
164 169Right-handed alpha
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There are 2 sheets in PDB entry 4P0T. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
16 21parallel
Strand 3
A
65 71parallel
Strand 4
A
97 102parallel
Strand 5
A
128 130parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 49first strand
Strand 2
B
16 21parallel
Strand 3
B
65 71parallel
Strand 4
B
97 102parallel
Strand 5
B
128 130parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il