Analysis of interatomic Contacts of Structural Units in PDB entry:
4P1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4P1T entry

There is 1 chain in PDB entry 4P1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1218VAL 1922
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 4P1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1266 1271Right-handed alpha
Helix 2
AA2
A
1274 1276Right-handed 310
Helix 3
AA3
A
1288 1291Right-handed 310
Helix 4
AA4
A
1292 1317Right-handed alpha
Helix 5
AA5
A
1320 1324Right-handed 310
Helix 6
AA6
A
1342 1359Right-handed alpha
Helix 7
AA7
A
1369 1382Right-handed alpha
Helix 8
AA8
A
1400 1427Right-handed alpha
Helix 9
AA9
A
1434 1438Right-handed 310
Helix 10
AB1
A
1444 1447Right-handed 310
Helix 11
AB2
A
1448 1476Right-handed alpha
Helix 12
AB3
A
1499 1530Right-handed alpha
Helix 13
AB4
A
1534 1543Right-handed alpha
Helix 14
AB5
A
1544 1547Right-handed 310
Helix 15
AB6
A
1550 1555Right-handed alpha
Helix 16
AB7
A
1558 1565Right-handed alpha
Helix 17
AB8
A
1567 1571Right-handed 310
Helix 18
AB9
A
1625 1630Right-handed alpha
Helix 19
AC1
A
1635 1643Right-handed alpha
Helix 20
AC2
A
1647 1674Right-handed alpha
Helix 21
AC3
A
1679 1703Right-handed alpha
Helix 22
AC4
A
1712 1725Right-handed alpha
Helix 23
AC5
A
1730 1744Right-handed alpha
Helix 24
AC6
A
1755 1775Right-handed alpha
Helix 25
AC7
A
1793 1819Right-handed alpha
Helix 26
AC8
A
1837 1867Right-handed alpha
Helix 27
AC9
A
1887 1897Right-handed alpha
Helix 28
AD1
A
1915 1920Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 4P1T.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1278 1279first strand
Strand 2
A
1285 1286anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il