Analysis of interatomic Contacts of Structural Units in PDB entry:
4P1V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4P1V entry

There are 4 chains in PDB entry 4P1V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 232	VAL 525
B	GLN 231	VAL 525
C	GLN 231	GLY 526
D	LEU 232	GLY 526

There are 18 helices in PDB entry 4P1V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	238	242	Right-handed 310
Helix 2	AA2	A	284	288	Right-handed 310
Helix 3	AA3	A	361	364	Right-handed 310
Helix 4	AA4	A	448	459	Right-handed alpha
Helix 5	AA5	A	500	504	Right-handed 310
Helix 6	AA6	B	238	242	Right-handed 310
Helix 7	AA7	B	284	288	Right-handed 310
Helix 8	AA8	B	361	364	Right-handed 310
Helix 9	AA9	B	448	459	Right-handed alpha
Helix 10	AB1	B	500	504	Right-handed 310
Helix 11	AB2	C	238	242	Right-handed 310
Helix 12	AB3	C	284	288	Right-handed 310
Helix 13	AB4	C	448	459	Right-handed alpha
Helix 14	AB5	C	500	504	Right-handed 310
Helix 15	AB6	D	238	242	Right-handed 310
Helix 16	AB7	D	284	288	Right-handed 310
Helix 17	AB8	D	448	459	Right-handed alpha
Helix 18	AB9	D	500	504	Right-handed 310

There are 12 sheets in PDB entry 4P1V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	255	first strand
Strand 2	A	428	431	anti-parallel
Strand 3	A	443	445	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	354	first strand
Strand 2	A	332	339	anti-parallel
Strand 3	A	378	387	anti-parallel
Strand 4	A	290	298	anti-parallel
Strand 5	A	301	307	anti-parallel
Strand 6	A	366	369	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	426	first strand
Strand 2	A	490	493	anti-parallel
Strand 3	A	479	486	anti-parallel
Strand 4	A	466	472	anti-parallel
Strand 5	A	509	516	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	255	first strand
Strand 2	B	428	431	anti-parallel
Strand 3	B	443	445	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	354	first strand
Strand 2	B	332	339	anti-parallel
Strand 3	B	378	387	anti-parallel
Strand 4	B	290	296	anti-parallel
Strand 5	B	303	307	anti-parallel
Strand 6	B	366	368	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	426	first strand
Strand 2	B	490	493	anti-parallel
Strand 3	B	479	486	anti-parallel
Strand 4	B	466	472	anti-parallel
Strand 5	B	509	516	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	253	255	first strand
Strand 2	C	428	432	anti-parallel
Strand 3	C	442	445	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	354	first strand
Strand 2	C	332	339	anti-parallel
Strand 3	C	378	387	anti-parallel
Strand 4	C	290	297	anti-parallel
Strand 5	C	302	306	anti-parallel
Strand 6	C	366	369	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	425	426	first strand
Strand 2	C	490	493	anti-parallel
Strand 3	C	479	486	anti-parallel
Strand 4	C	466	472	anti-parallel
Strand 5	C	509	516	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	253	255	first strand
Strand 2	D	428	431	anti-parallel
Strand 3	D	443	445	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	349	354	first strand
Strand 2	D	332	339	anti-parallel
Strand 3	D	378	387	anti-parallel
Strand 4	D	290	297	anti-parallel
Strand 5	D	302	307	anti-parallel
Strand 6	D	366	368	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	425	426	first strand
Strand 2	D	490	493	anti-parallel
Strand 3	D	479	486	anti-parallel
Strand 4	D	466	472	anti-parallel
Strand 5	D	509	516	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4P1V

Analysis of interatomic Contacts of Structural Units in PDB entry:
4P1V