Analysis of interatomic Contacts of Structural Units in PDB entry:
4P3M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4P3M entry

There are 2 chains in PDB entry 4P3M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 422
B
 MET 1LEU 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 4P3M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed alpha
Helix 2
AA2
A
12 29Right-handed alpha
Helix 3
AA3
A
40 48Right-handed alpha
Helix 4
AA4
A
49 54Right-handed 310
Helix 5
AA5
A
70 87Right-handed alpha
Helix 6
AA6
A
97 110Right-handed alpha
Helix 7
AA7
A
155 167Right-handed alpha
Helix 8
AA8
A
183 195Right-handed alpha
Helix 9
AA9
A
205 211Right-handed alpha
Helix 10
AB1
A
245 257Right-handed alpha
Helix 11
AB2
A
265 279Right-handed alpha
Helix 12
AB3
A
281 305Right-handed alpha
Helix 13
AB4
A
329 340Right-handed alpha
Helix 14
AB5
A
366 372Right-handed alpha
Helix 15
AB6
A
375 396Right-handed alpha
Helix 16
AB7
A
398 417Right-handed alpha
Helix 17
AB8
B
7 12Right-handed alpha
Helix 18
AB9
B
12 29Right-handed alpha
Helix 19
AC1
B
40 48Right-handed alpha
Helix 20
AC2
B
49 54Right-handed 310
Helix 21
AC3
B
70 87Right-handed alpha
Helix 22
AC4
B
97 110Right-handed alpha
Helix 23
AC5
B
155 167Right-handed alpha
Helix 24
AC6
B
183 195Right-handed alpha
Helix 25
AC7
B
205 211Right-handed alpha
Helix 26
AC8
B
245 257Right-handed alpha
Helix 27
AC9
B
265 280Right-handed alpha
Helix 28
AD1
B
281 305Right-handed alpha
Helix 29
AD2
B
324 327Right-handed 310
Helix 30
AD3
B
329 340Right-handed alpha
Helix 31
AD4
B
366 372Right-handed alpha
Helix 32
AD5
B
375 393Right-handed alpha
Helix 33
AD6
B
395 417Right-handed alpha
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There are 10 sheets in PDB entry 4P3M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
B
420 421parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 31first strand
Strand 2
A
342 343parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
62 63anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
238 242anti-parallel
Strand 3
A
223 227anti-parallel
Strand 4
A
197 201parallel
Strand 5
A
170 173parallel
Strand 6
A
115 118parallel
Strand 7
A
141 144parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 310first strand
Strand 2
A
318 322anti-parallel
Strand 3
A
361 365anti-parallel
Strand 4
A
345 346anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 421first strand
Strand 2
B
2 3parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 31first strand
Strand 2
B
342 343parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 59first strand
Strand 2
B
62 63anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
238 242anti-parallel
Strand 3
B
223 227anti-parallel
Strand 4
B
197 201parallel
Strand 5
B
170 174parallel
Strand 6
B
115 118parallel
Strand 7
B
141 144parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 310first strand
Strand 2
B
318 322anti-parallel
Strand 3
B
361 365anti-parallel
Strand 4
B
345 346anti-parallel
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