Analysis of interatomic Contacts of Structural Units in PDB entry:
4P52


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4P52 entry

There is 1 chain in PDB entry 4P52 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN -5ILE 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 4P52. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 77Right-handed alpha
Helix 2
AA2
A
97 114Right-handed alpha
Helix 3
AA3
A
119 122Right-handed 310
Helix 4
AA4
A
123 136Right-handed alpha
Helix 5
AA5
A
139 149Right-handed alpha
Helix 6
AA6
A
183 190Right-handed alpha
Helix 7
AA7
A
196 216Right-handed alpha
Helix 8
AA8
A
218 226Right-handed alpha
Helix 9
AA9
A
230 236Right-handed alpha
Helix 10
AB1
A
237 239Right-handed 310
Helix 11
AB2
A
241 252Right-handed alpha
Helix 12
AB3
A
272 289Right-handed alpha
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There are 3 sheets in PDB entry 4P52. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 50first strand
Strand 2
A
81 88parallel
Strand 3
A
23 39anti-parallel
Strand 4
A
151 156anti-parallel
Strand 5
A
161 165anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 50first strand
Strand 2
A
81 88parallel
Strand 3
A
23 39anti-parallel
Strand 4
A
4 14anti-parallel
Strand 5
A
307 308anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 259first strand
Strand 2
A
266 270anti-parallel
Strand 3
A
172 178anti-parallel
Strand 4
A
294 300anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il