Analysis of interatomic Contacts of Structural Units in PDB entry:
4P5D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4P5D entry

There are 2 chains in PDB entry 4P5D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ARG 10LEU 151
A
 ARG 9VAL 152
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 4P5D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
24 36Right-handed alpha
Helix 2
AA2
C
43 48Right-handed 310
Helix 3
AA3
C
60 76Right-handed alpha
Helix 4
AA4
C
87 101Right-handed alpha
Helix 5
AA5
C
109 113Right-handed 310
Helix 6
AA6
C
117 122Right-handed alpha
Helix 7
AA7
C
135 137Right-handed 310
Helix 8
AA8
C
138 150Right-handed alpha
Helix 9
AA9
A
24 36Right-handed alpha
Helix 10
AB1
A
43 48Right-handed 310
Helix 11
AB2
A
60 76Right-handed alpha
Helix 12
AB3
A
87 100Right-handed alpha
Helix 13
AB4
A
109 113Right-handed 310
Helix 14
AB5
A
117 122Right-handed alpha
Helix 15
AB6
A
135 137Right-handed 310
Helix 16
AB7
A
138 150Right-handed alpha
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There are 2 sheets in PDB entry 4P5D. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
40 41first strand
Strand 2
C
11 15parallel
Strand 3
C
78 82parallel
Strand 4
C
104 108parallel
Strand 5
C
129 133parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 41first strand
Strand 2
A
11 15parallel
Strand 3
A
78 82parallel
Strand 4
A
104 108parallel
Strand 5
A
129 133parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il