Analysis of interatomic Contacts of Structural Units in PDB entry:
4P5F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4P5F entry

There are 2 chains in PDB entry 4P5F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 89VAL 455
B
 THR 86VAL 455
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 4P5F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
91 102Right-handed alpha
Helix 2
AA2
A
121 136Right-handed alpha
Helix 3
AA3
A
150 168Right-handed alpha
Helix 4
AA4
A
184 191Right-handed alpha
Helix 5
AA5
A
195 202Right-handed 310
Helix 6
AA6
A
204 208Right-handed 310
Helix 7
AA7
A
213 223Right-handed alpha
Helix 8
AA8
A
235 252Right-handed alpha
Helix 9
AA9
A
278 284Right-handed alpha
Helix 10
AB1
A
284 299Right-handed alpha
Helix 11
AB2
A
307 313Right-handed alpha
Helix 12
AB3
A
316 325Right-handed alpha
Helix 13
AB4
A
328 351Right-handed alpha
Helix 14
AB5
A
358 367Right-handed alpha
Helix 15
AB6
A
384 389Right-handed alpha
Helix 16
AB7
A
390 392Right-handed 310
Helix 17
AB8
A
397 407Right-handed alpha
Helix 18
AB9
A
407 415Right-handed alpha
Helix 19
AC1
A
438 454Right-handed alpha
Helix 20
AC2
B
90 101Right-handed alpha
Helix 21
AC3
B
102 104Right-handed 310
Helix 22
AC4
B
121 136Right-handed alpha
Helix 23
AC5
B
150 168Right-handed alpha
Helix 24
AC6
B
184 191Right-handed alpha
Helix 25
AC7
B
195 202Right-handed 310
Helix 26
AC8
B
204 208Right-handed 310
Helix 27
AC9
B
213 223Right-handed alpha
Helix 28
AD1
B
235 245Right-handed alpha
Helix 29
AD2
B
245 252Right-handed alpha
Helix 30
AD3
B
278 284Right-handed alpha
Helix 31
AD4
B
284 298Right-handed alpha
Helix 32
AD5
B
307 313Right-handed alpha
Helix 33
AD6
B
316 321Right-handed 310
Helix 34
AD7
B
328 351Right-handed alpha
Helix 35
AD8
B
358 367Right-handed alpha
Helix 36
AD9
B
388 392Right-handed 310
Helix 37
AE1
B
397 407Right-handed alpha
Helix 38
AE2
B
407 415Right-handed alpha
Helix 39
AE3
B
432 436Right-handed 310
Helix 40
AE4
B
438 454Right-handed alpha
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There are 2 sheets in PDB entry 4P5F. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 177first strand
Strand 2
A
139 146parallel
Strand 3
A
109 115parallel
Strand 4
A
227 231parallel
Strand 5
A
253 259parallel
Strand 6
A
302 305parallel
Strand 7
A
428 431parallel
Strand 8
A
418 419anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
174 177first strand
Strand 2
B
139 146parallel
Strand 3
B
109 115parallel
Strand 4
B
227 232parallel
Strand 5
B
253 260parallel
Strand 6
B
302 306parallel
Strand 7
B
428 431parallel
Strand 8
B
418 419anti-parallel
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