Analysis of interatomic Contacts of Structural Units in PDB entry:
4P5W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4P5W entry

There are 2 chains in PDB entry 4P5W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 9LEU 658
B
 ARG 11LEU 658
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 4P5W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 25Right-handed alpha
Helix 2
AA2
A
36 41Right-handed alpha
Helix 3
AA3
A
54 66Right-handed alpha
Helix 4
AA4
A
74 87Right-handed alpha
Helix 5
AA5
A
89 100Right-handed alpha
Helix 6
AA6
A
108 119Right-handed alpha
Helix 7
AA7
A
119 125Right-handed alpha
Helix 8
AA8
A
131 139Right-handed alpha
Helix 9
AA9
A
147 171Right-handed alpha
Helix 10
AB1
A
180 191Right-handed alpha
Helix 11
AB2
A
192 195Right-handed 310
Helix 12
AB3
A
196 209Right-handed alpha
Helix 13
AB4
A
217 229Right-handed alpha
Helix 14
AB5
A
229 242Right-handed alpha
Helix 15
AB6
A
251 259Right-handed alpha
Helix 16
AB7
A
265 280Right-handed alpha
Helix 17
AB8
A
286 294Right-handed alpha
Helix 18
AB9
A
637 641Right-handed 310
Helix 19
AC1
A
642 655Right-handed alpha
Helix 20
AC2
B
13 25Right-handed alpha
Helix 21
AC3
B
36 41Right-handed alpha
Helix 22
AC4
B
55 66Right-handed alpha
Helix 23
AC5
B
74 87Right-handed alpha
Helix 24
AC6
B
89 100Right-handed alpha
Helix 25
AC7
B
108 119Right-handed alpha
Helix 26
AC8
B
119 125Right-handed alpha
Helix 27
AC9
B
131 139Right-handed alpha
Helix 28
AD1
B
147 171Right-handed alpha
Helix 29
AD2
B
179 191Right-handed alpha
Helix 30
AD3
B
192 195Right-handed 310
Helix 31
AD4
B
196 209Right-handed alpha
Helix 32
AD5
B
217 229Right-handed alpha
Helix 33
AD6
B
229 242Right-handed alpha
Helix 34
AD7
B
251 258Right-handed alpha
Helix 35
AD8
B
265 280Right-handed alpha
Helix 36
AD9
B
286 294Right-handed alpha
Helix 37
AE1
B
637 641Right-handed 310
Helix 38
AE2
B
642 655Right-handed alpha
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There are 6 sheets in PDB entry 4P5W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 29first strand
Strand 2
A
32 34anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
214 216anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
284 285anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 29first strand
Strand 2
B
32 34anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 178first strand
Strand 2
B
215 216anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
249 250first strand
Strand 2
B
284 285anti-parallel
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