Analysis of interatomic Contacts of Structural Units in PDB entry:
4P60


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4P60 entry

There are 2 chains in PDB entry 4P60 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 57LEU 295
B
 ARG 17GLN 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4P60. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 65Right-handed alpha
Helix 2
AA2
A
73 85Right-handed alpha
Helix 3
AA3
A
88 99Right-handed alpha
Helix 4
AA4
A
107 120Right-handed alpha
Helix 5
AA5
A
130 138Right-handed alpha
Helix 6
AA6
A
146 170Right-handed alpha
Helix 7
AA7
A
179 190Right-handed alpha
Helix 8
AA8
A
191 194Right-handed 310
Helix 9
AA9
A
195 201Right-handed alpha
Helix 10
AB1
A
201 206Right-handed alpha
Helix 11
AB2
A
216 240Right-handed alpha
Helix 12
AB3
A
249 260Right-handed alpha
Helix 13
AB4
A
264 279Right-handed alpha
Helix 14
AB5
A
285 293Right-handed alpha
Helix 15
AB6
B
18 22Right-handed alpha
Helix 16
AB7
B
35 41Right-handed alpha
Helix 17
AB8
B
55 62Right-handed alpha
Helix 18
AB9
B
73 85Right-handed alpha
Helix 19
AC1
B
88 99Right-handed alpha
Helix 20
AC2
B
107 118Right-handed alpha
Helix 21
AC3
B
130 138Right-handed alpha
Helix 22
AC4
B
146 170Right-handed alpha
Helix 23
AC5
B
179 190Right-handed alpha
Helix 24
AC6
B
191 194Right-handed 310
Helix 25
AC7
B
195 201Right-handed alpha
Helix 26
AC8
B
201 206Right-handed alpha
Helix 27
AC9
B
216 239Right-handed alpha
Helix 28
AD1
B
249 261Right-handed alpha
Helix 29
AD2
B
264 279Right-handed alpha
Helix 30
AD3
B
285 293Right-handed alpha
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There are 3 sheets in PDB entry 4P60. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
A
213 215anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 28first strand
Strand 2
B
31 33anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 178first strand
Strand 2
B
213 215anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il