Analysis of interatomic Contacts of Structural Units in PDB entry:
4P69

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4P69 entry

There are 4 chains in PDB entry 4P69 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 4	VAL 571
B	LEU 5	VAL 571
C	GLU 2	MET 416
D	GLU 2	MET 416

There are 79 helices in PDB entry 4P69. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	30	Right-handed alpha
Helix 2	AA2	A	30	37	Right-handed alpha
Helix 3	AA3	A	39	68	Right-handed alpha
Helix 4	AA4	A	79	89	Right-handed alpha
Helix 5	AA5	A	95	111	Right-handed alpha
Helix 6	AA6	A	148	159	Right-handed alpha
Helix 7	AA7	A	171	184	Right-handed alpha
Helix 8	AA8	A	185	192	Right-handed alpha
Helix 9	AA9	A	242	250	Right-handed alpha
Helix 10	AB1	A	263	275	Right-handed alpha
Helix 11	AB2	A	279	287	Right-handed alpha
Helix 12	AB3	A	289	308	Right-handed alpha
Helix 13	AB4	A	349	363	Right-handed alpha
Helix 14	AB5	A	383	385	Right-handed 310
Helix 15	AB6	A	386	397	Right-handed alpha
Helix 16	AB7	A	422	426	Right-handed alpha
Helix 17	AB8	A	427	429	Right-handed 310
Helix 18	AB9	A	430	450	Right-handed alpha
Helix 19	AC1	A	459	461	Right-handed 310
Helix 20	AC2	A	497	501	Right-handed 310
Helix 21	AC3	A	514	517	Right-handed 310
Helix 22	AC4	A	518	523	Right-handed alpha
Helix 23	AC5	A	527	536	Right-handed alpha
Helix 24	AC6	A	537	540	Right-handed 310
Helix 25	AC7	A	541	553	Right-handed alpha
Helix 26	AC8	B	6	29	Right-handed alpha
Helix 27	AC9	B	30	38	Right-handed alpha
Helix 28	AD1	B	40	68	Right-handed alpha
Helix 29	AD2	B	78	89	Right-handed alpha
Helix 30	AD3	B	95	112	Right-handed alpha
Helix 31	AD4	B	151	160	Right-handed alpha
Helix 32	AD5	B	168	185	Right-handed alpha
Helix 33	AD6	B	185	190	Right-handed alpha
Helix 34	AD7	B	230	232	Right-handed 310
Helix 35	AD8	B	242	250	Right-handed alpha
Helix 36	AD9	B	263	275	Right-handed alpha
Helix 37	AE1	B	279	288	Right-handed alpha
Helix 38	AE2	B	289	307	Right-handed alpha
Helix 39	AE3	B	349	362	Right-handed alpha
Helix 40	AE4	B	383	385	Right-handed 310
Helix 41	AE5	B	386	398	Right-handed alpha
Helix 42	AE6	B	422	429	Right-handed alpha
Helix 43	AE7	B	430	451	Right-handed alpha
Helix 44	AE8	B	459	461	Right-handed 310
Helix 45	AE9	B	495	501	Right-handed 310
Helix 46	AF1	B	517	523	Right-handed alpha
Helix 47	AF2	B	527	536	Right-handed alpha
Helix 48	AF3	B	537	540	Right-handed 310
Helix 49	AF4	B	541	555	Right-handed alpha
Helix 50	AF5	C	37	58	Right-handed alpha
Helix 51	AF6	C	72	78	Right-handed alpha
Helix 52	AF7	C	85	95	Right-handed alpha
Helix 53	AF8	C	113	122	Right-handed alpha
Helix 54	AF9	C	169	182	Right-handed alpha
Helix 55	AG1	C	203	221	Right-handed alpha
Helix 56	AG2	C	238	253	Right-handed alpha
Helix 57	AG3	C	282	292	Right-handed alpha
Helix 58	AG4	C	302	318	Right-handed alpha
Helix 59	AG5	C	342	346	Right-handed 310
Helix 60	AG6	C	353	366	Right-handed alpha
Helix 61	AG7	C	369	386	Right-handed alpha
Helix 62	AG8	C	390	395	Right-handed alpha
Helix 63	AG9	C	404	415	Right-handed alpha
Helix 64	AH1	D	37	58	Right-handed alpha
Helix 65	AH2	D	71	78	Right-handed alpha
Helix 66	AH3	D	85	96	Right-handed alpha
Helix 67	AH4	D	113	122	Right-handed alpha
Helix 68	AH5	D	158	162	Right-handed 310
Helix 69	AH6	D	170	181	Right-handed alpha
Helix 70	AH7	D	203	220	Right-handed alpha
Helix 71	AH8	D	238	254	Right-handed alpha
Helix 72	AH9	D	282	292	Right-handed alpha
Helix 73	AI1	D	293	296	Right-handed 310
Helix 74	AI2	D	302	317	Right-handed alpha
Helix 75	AI3	D	342	346	Right-handed 310
Helix 76	AI4	D	353	367	Right-handed alpha
Helix 77	AI5	D	369	386	Right-handed alpha
Helix 78	AI6	D	390	397	Right-handed alpha
Helix 79	AI7	D	404	416	Right-handed alpha

There are 20 sheets in PDB entry 4P69. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	143	first strand
Strand 2	A	193	196	anti-parallel
Strand 3	A	206	214	anti-parallel
Strand 4	A	201	203	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	143	first strand
Strand 2	A	193	196	anti-parallel
Strand 3	A	206	214	anti-parallel
Strand 4	A	219	227	anti-parallel
Strand 5	A	235	236	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	A	323	327	anti-parallel
Strand 3	A	333	338	anti-parallel
Strand 4	A	407	417	anti-parallel
Strand 5	A	373	381	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	314	first strand
Strand 2	A	323	327	anti-parallel
Strand 3	A	333	338	anti-parallel
Strand 4	A	407	417	anti-parallel
Strand 5	A	401	404	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	421	first strand
Strand 2	A	463	465	anti-parallel
Strand 3	A	471	473	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	454	first strand
Strand 2	A	480	481	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	487	first strand
Strand 2	A	512	513	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	143	first strand
Strand 2	B	193	197	anti-parallel
Strand 3	B	206	214	anti-parallel
Strand 4	B	219	228	anti-parallel
Strand 5	B	234	236	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	143	first strand
Strand 2	B	193	197	anti-parallel
Strand 3	B	206	214	anti-parallel
Strand 4	B	201	203	anti-parallel
Strand 5	B	258	259	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	314	first strand
Strand 2	B	323	327	anti-parallel
Strand 3	B	333	338	anti-parallel
Strand 4	B	407	417	anti-parallel
Strand 5	B	373	381	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	314	first strand
Strand 2	B	323	327	anti-parallel
Strand 3	B	333	338	anti-parallel
Strand 4	B	407	417	anti-parallel
Strand 5	B	401	404	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	421	first strand
Strand 2	B	463	465	anti-parallel
Strand 3	B	471	473	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	487	first strand
Strand 2	B	512	513	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	21	22	anti-parallel

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There are 12 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	67	first strand
Strand 2	C	28	32	parallel
Strand 3	C	97	100	parallel
Strand 4	C	333	336	parallel
Strand 5	C	325	328	anti-parallel
Strand 6	C	126	132	anti-parallel
Strand 7	C	148	154	anti-parallel
Strand 8	C	298	301	parallel
Strand 9	C	224	229	parallel
Strand 10	C	274	281	parallel
Strand 11	C	261	267	anti-parallel
Strand 12	C	256	258	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	165	first strand
Strand 2	C	194	202	anti-parallel
Strand 3	D	194	202	anti-parallel
Strand 4	D	164	165	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	388	389	first strand
Strand 2	C	401	402	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	17	first strand
Strand 2	D	20	22	anti-parallel

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There are 12 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	67	first strand
Strand 2	D	28	32	parallel
Strand 3	D	97	100	parallel
Strand 4	D	333	337	parallel
Strand 5	D	324	328	anti-parallel
Strand 6	D	126	132	anti-parallel
Strand 7	D	148	154	anti-parallel
Strand 8	D	297	301	parallel
Strand 9	D	224	229	parallel
Strand 10	D	274	281	parallel
Strand 11	D	261	267	anti-parallel
Strand 12	D	255	258	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	388	389	first strand
Strand 2	D	401	402	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4P69

Analysis of interatomic Contacts of Structural Units in PDB entry:
4P69