Analysis of interatomic Contacts of Structural Units in PDB entry:
4P6B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4P6B entry

There are 2 chains in PDB entry 4P6B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0GLY 389
B
 ASP 3LEU 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 4P6B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 15Right-handed alpha
Helix 2
AA2
A
59 74Right-handed alpha
Helix 3
AA3
A
82 86Right-handed 310
Helix 4
AA4
A
87 91Right-handed 310
Helix 5
AA5
A
110 116Right-handed alpha
Helix 6
AA6
A
131 139Right-handed alpha
Helix 7
AA7
A
147 157Right-handed alpha
Helix 8
AA8
A
172 186Right-handed alpha
Helix 9
AA9
A
188 197Right-handed alpha
Helix 10
AB1
A
214 218Right-handed 310
Helix 11
AB2
A
267 277Right-handed alpha
Helix 12
AB3
A
290 299Right-handed alpha
Helix 13
AB4
A
330 334Right-handed 310
Helix 14
AB5
A
357 359Right-handed 310
Helix 15
AB6
A
375 388Right-handed alpha
Helix 16
AB7
B
4 15Right-handed alpha
Helix 17
AB8
B
59 74Right-handed alpha
Helix 18
AB9
B
82 86Right-handed 310
Helix 19
AC1
B
87 91Right-handed 310
Helix 20
AC2
B
110 116Right-handed alpha
Helix 21
AC3
B
131 139Right-handed alpha
Helix 22
AC4
B
147 157Right-handed alpha
Helix 23
AC5
B
172 186Right-handed alpha
Helix 24
AC6
B
188 197Right-handed alpha
Helix 25
AC7
B
214 218Right-handed 310
Helix 26
AC8
B
267 277Right-handed alpha
Helix 27
AC9
B
290 299Right-handed alpha
Helix 28
AD1
B
330 334Right-handed 310
Helix 29
AD2
B
357 359Right-handed 310
Helix 30
AD3
B
375 388Right-handed alpha
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There are 11 sheets in PDB entry 4P6B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 38first strand
Strand 2
A
20 27anti-parallel
Strand 3
A
361 366anti-parallel
Strand 4
A
352 356anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
264 266anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 96first strand
Strand 2
A
102 104anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 223first strand
Strand 2
A
369 370parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 311first strand
Strand 2
A
314 316anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 321first strand
Strand 2
A
326 328anti-parallel
Strand 3
A
343 344anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
B
30 41anti-parallel
Strand 3
B
20 27anti-parallel
Strand 4
B
361 366anti-parallel
Strand 5
B
352 356anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
264 266anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 96first strand
Strand 2
B
102 104anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
309 311first strand
Strand 2
B
314 316anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
319 321first strand
Strand 2
B
326 328anti-parallel
Strand 3
B
343 344anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il