Analysis of interatomic Contacts of Structural Units in PDB entry:
4P6Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4P6Q entry

There is 1 chain in PDB entry 4P6Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 335ARG 620
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4P6Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
347 360Right-handed alpha
Helix 2
AA2
A
361 363Right-handed 310
Helix 3
AA3
A
385 396Right-handed alpha
Helix 4
AA4
A
413 423Right-handed alpha
Helix 5
AA5
A
450 459Right-handed alpha
Helix 6
AA6
A
485 497Right-handed alpha
Helix 7
AA7
A
529 538Right-handed alpha
Helix 8
AA8
A
539 541Right-handed 310
Helix 9
AA9
A
561 573Right-handed alpha
Helix 10
AB1
A
588 602Right-handed alpha
Helix 11
AB2
A
608 619Right-handed alpha
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There are 6 sheets in PDB entry 4P6Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 371first strand
Strand 2
A
378 383anti-parallel
Strand 3
A
336 340anti-parallel
Strand 4
A
407 410anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
404 405anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
464 472first strand
Strand 2
A
475 483anti-parallel
Strand 3
A
439 443anti-parallel
Strand 4
A
507 510anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 501first strand
Strand 2
A
504 505anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
543 549first strand
Strand 2
A
554 559anti-parallel
Strand 3
A
518 522anti-parallel
Strand 4
A
583 586anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
576 577first strand
Strand 2
A
580 581anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il