Analysis of interatomic Contacts of Structural Units in PDB entry:
4P86

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4P86 entry

There are 4 chains in PDB entry 4P86 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	GLU 181
B	LYS 4	GLU 181
C	GLN 3	ASN 180
D	GLN 3	ASN 180

There are 16 helices in PDB entry 4P86. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	29	Right-handed alpha
Helix 2	AA2	A	40	59	Right-handed alpha
Helix 3	AA3	A	111	125	Right-handed alpha
Helix 4	AA4	A	166	171	Right-handed alpha
Helix 5	AA5	B	9	29	Right-handed alpha
Helix 6	AA6	B	40	59	Right-handed alpha
Helix 7	AA7	B	111	122	Right-handed alpha
Helix 8	AA8	B	166	171	Right-handed alpha
Helix 9	AA9	C	9	29	Right-handed alpha
Helix 10	AB1	C	40	59	Right-handed alpha
Helix 11	AB2	C	111	125	Right-handed alpha
Helix 12	AB3	C	166	171	Right-handed alpha
Helix 13	AB4	D	9	29	Right-handed alpha
Helix 14	AB5	D	40	59	Right-handed alpha
Helix 15	AB6	D	111	125	Right-handed alpha
Helix 16	AB7	D	166	171	Right-handed alpha

There are 8 sheets in PDB entry 4P86. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	A	174	179	anti-parallel
Strand 3	A	160	165	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	91	first strand
Strand 2	A	63	72	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	100	108	parallel
Strand 5	A	129	137	parallel
Strand 6	A	149	153	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	8	first strand
Strand 2	B	174	179	anti-parallel
Strand 3	B	160	165	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	91	first strand
Strand 2	B	64	72	anti-parallel
Strand 3	B	34	39	parallel
Strand 4	B	100	108	parallel
Strand 5	B	129	137	parallel
Strand 6	B	149	153	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	174	179	anti-parallel
Strand 3	C	160	165	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	91	first strand
Strand 2	C	64	72	anti-parallel
Strand 3	C	34	39	parallel
Strand 4	C	100	108	parallel
Strand 5	C	129	137	parallel
Strand 6	C	149	153	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	8	first strand
Strand 2	D	174	179	anti-parallel
Strand 3	D	160	165	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	91	first strand
Strand 2	D	63	72	anti-parallel
Strand 3	D	34	39	parallel
Strand 4	D	100	108	parallel
Strand 5	D	129	137	parallel
Strand 6	D	149	153	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4P86

Analysis of interatomic Contacts of Structural Units in PDB entry:
4P86