Analysis of interatomic Contacts of Structural Units in PDB entry:
4P8H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4P8H entry

There are 2 chains in PDB entry 4P8H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 8LEU 461
B
 THR 7LEU 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 4P8H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 44Right-handed alpha
Helix 2
AA2
A
97 106Right-handed alpha
Helix 3
AA3
A
122 130Right-handed alpha
Helix 4
AA4
A
135 140Right-handed alpha
Helix 5
AA5
A
141 144Right-handed 310
Helix 6
AA6
A
167 175Right-handed alpha
Helix 7
AA7
A
208 218Right-handed alpha
Helix 8
AA8
A
219 224Right-handed 310
Helix 9
AA9
A
259 263Right-handed 310
Helix 10
AB1
A
295 302Right-handed alpha
Helix 11
AB2
A
310 314Right-handed alpha
Helix 12
AB3
A
343 357Right-handed alpha
Helix 13
AB4
A
395 410Right-handed alpha
Helix 14
AB5
A
423 431Right-handed alpha
Helix 15
AB6
A
433 445Right-handed alpha
Helix 16
AB7
A
452 458Right-handed alpha
Helix 17
AB8
B
31 41Right-handed alpha
Helix 18
AB9
B
41 46Right-handed alpha
Helix 19
AC1
B
61 65Right-handed 310
Helix 20
AC2
B
97 106Right-handed alpha
Helix 21
AC3
B
122 130Right-handed alpha
Helix 22
AC4
B
135 140Right-handed alpha
Helix 23
AC5
B
141 144Right-handed 310
Helix 24
AC6
B
167 175Right-handed alpha
Helix 25
AC7
B
208 218Right-handed alpha
Helix 26
AC8
B
219 224Right-handed 310
Helix 27
AC9
B
257 262Right-handed 310
Helix 28
AD1
B
292 301Right-handed alpha
Helix 29
AD2
B
343 356Right-handed alpha
Helix 30
AD3
B
395 410Right-handed alpha
Helix 31
AD4
B
416 419Right-handed 310
Helix 32
AD5
B
423 431Right-handed alpha
Helix 33
AD6
B
433 445Right-handed alpha
Helix 34
AD7
B
452 458Right-handed alpha
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There are 7 sheets in PDB entry 4P8H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 13first strand
Strand 2
A
22 28anti-parallel
Strand 3
A
70 73parallel
Strand 4
A
51 54parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 161first strand
Strand 2
A
146 152anti-parallel
Strand 3
A
183 190anti-parallel
Strand 4
A
89 93anti-parallel
Strand 5
A
80 84anti-parallel
Strand 6
B
80 84anti-parallel
Strand 7
B
89 93anti-parallel
Strand 8
B
183 190anti-parallel
Strand 9
B
146 152anti-parallel
Strand 10
B
158 161anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
192 193anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 309first strand
Strand 2
A
198 205anti-parallel
Strand 3
A
243 250anti-parallel
Strand 4
A
226 231anti-parallel
Strand 5
A
364 368anti-parallel
Strand 6
A
383 391anti-parallel
Strand 7
A
332 340anti-parallel
Strand 8
A
413 414anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 13first strand
Strand 2
B
22 27anti-parallel
Strand 3
B
70 73parallel
Strand 4
B
51 54parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 111first strand
Strand 2
B
192 193anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 308first strand
Strand 2
B
199 205anti-parallel
Strand 3
B
243 250anti-parallel
Strand 4
B
226 231anti-parallel
Strand 5
B
364 368anti-parallel
Strand 6
B
383 388anti-parallel
Strand 7
B
335 340anti-parallel
Strand 8
B
413 414anti-parallel
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