Analysis of interatomic Contacts of Structural Units in PDB entry:
4P8Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4P8Q entry

There are 2 chains in PDB entry 4P8Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 159	LEU 1025
B	LEU 160	LEU 1025

There are 74 helices in PDB entry 4P8Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	298	303	Right-handed alpha
Helix 2	AA2	A	357	359	Right-handed 310
Helix 3	AA3	A	383	389	Right-handed 310
Helix 4	AA4	A	390	409	Right-handed alpha
Helix 5	AA5	A	440	444	Right-handed alpha
Helix 6	AA6	A	451	468	Right-handed alpha
Helix 7	AA7	A	479	481	Right-handed 310
Helix 8	AA8	A	482	501	Right-handed alpha
Helix 9	AA9	A	502	506	Right-handed 310
Helix 10	AB1	A	507	523	Right-handed alpha
Helix 11	AB2	A	536	543	Right-handed alpha
Helix 12	AB3	A	545	563	Right-handed alpha
Helix 13	AB4	A	564	579	Right-handed alpha
Helix 14	AB5	A	586	594	Right-handed alpha
Helix 15	AB6	A	606	612	Right-handed alpha
Helix 16	AB7	A	694	697	Right-handed 310
Helix 17	AB8	A	705	719	Right-handed alpha
Helix 18	AB9	A	720	723	Right-handed 310
Helix 19	AC1	A	724	742	Right-handed alpha
Helix 20	AC2	A	745	753	Right-handed alpha
Helix 21	AC3	A	754	759	Right-handed 310
Helix 22	AC4	A	761	782	Right-handed alpha
Helix 23	AC5	A	784	805	Right-handed alpha
Helix 24	AC6	A	813	830	Right-handed alpha
Helix 25	AC7	A	834	849	Right-handed alpha
Helix 26	AC8	A	856	868	Right-handed alpha
Helix 27	AC9	A	870	884	Right-handed alpha
Helix 28	AD1	A	886	900	Right-handed alpha
Helix 29	AD2	A	902	915	Right-handed alpha
Helix 30	AD3	A	920	922	Right-handed 310
Helix 31	AD4	A	923	934	Right-handed alpha
Helix 32	AD5	A	937	948	Right-handed alpha
Helix 33	AD6	A	948	956	Right-handed alpha
Helix 34	AD7	A	960	972	Right-handed alpha
Helix 35	AD8	A	976	991	Right-handed alpha
Helix 36	AD9	A	997	1018	Right-handed alpha
Helix 37	AE1	A	1019	1024	Right-handed 310
Helix 38	AE2	B	298	303	Right-handed alpha
Helix 39	AE3	B	355	359	Right-handed 310
Helix 40	AE4	B	383	387	Right-handed 310
Helix 41	AE5	B	390	408	Right-handed alpha
Helix 42	AE6	B	441	444	Right-handed 310
Helix 43	AE7	B	451	468	Right-handed alpha
Helix 44	AE8	B	479	481	Right-handed 310
Helix 45	AE9	B	482	502	Right-handed alpha
Helix 46	AF1	B	503	506	Right-handed 310
Helix 47	AF2	B	507	524	Right-handed alpha
Helix 48	AF3	B	536	542	Right-handed alpha
Helix 49	AF4	B	545	563	Right-handed alpha
Helix 50	AF5	B	564	579	Right-handed alpha
Helix 51	AF6	B	586	595	Right-handed alpha
Helix 52	AF7	B	605	613	Right-handed alpha
Helix 53	AF8	B	694	697	Right-handed 310
Helix 54	AF9	B	705	719	Right-handed alpha
Helix 55	AG1	B	724	742	Right-handed alpha
Helix 56	AG2	B	745	753	Right-handed alpha
Helix 57	AG3	B	754	759	Right-handed 310
Helix 58	AG4	B	761	782	Right-handed alpha
Helix 59	AG5	B	784	806	Right-handed alpha
Helix 60	AG6	B	813	830	Right-handed alpha
Helix 61	AG7	B	834	849	Right-handed alpha
Helix 62	AG8	B	856	858	Right-handed 310
Helix 63	AG9	B	859	868	Right-handed alpha
Helix 64	AH1	B	870	882	Right-handed alpha
Helix 65	AH2	B	886	898	Right-handed alpha
Helix 66	AH3	B	902	915	Right-handed alpha
Helix 67	AH4	B	920	922	Right-handed 310
Helix 68	AH5	B	923	932	Right-handed alpha
Helix 69	AH6	B	937	948	Right-handed alpha
Helix 70	AH7	B	948	956	Right-handed alpha
Helix 71	AH8	B	960	972	Right-handed alpha
Helix 72	AH9	B	976	989	Right-handed alpha
Helix 73	AI1	B	991	996	Right-handed alpha
Helix 74	AI2	B	997	1022	Right-handed alpha

There are 18 sheets in PDB entry 4P8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	215	221	anti-parallel
Strand 3	A	256	266	anti-parallel
Strand 4	A	189	200	anti-parallel
Strand 5	A	172	184	anti-parallel
Strand 6	A	312	322	parallel
Strand 7	A	343	348	anti-parallel
Strand 8	A	333	338	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	230	231	first strand
Strand 2	A	215	221	anti-parallel
Strand 3	A	256	266	anti-parallel
Strand 4	A	189	200	anti-parallel
Strand 5	A	172	184	anti-parallel
Strand 6	A	312	322	parallel
Strand 7	A	354	355	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	210	first strand
Strand 2	A	242	251	anti-parallel
Strand 3	A	233	237	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	280	first strand
Strand 2	A	286	293	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	329	first strand
Strand 2	A	361	364	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	373	first strand
Strand 2	A	376	382	anti-parallel
Strand 3	A	416	422	parallel
Strand 4	A	435	439	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	477	first strand
Strand 2	A	582	584	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	678	682	first strand
Strand 2	A	627	634	anti-parallel
Strand 3	A	617	624	anti-parallel
Strand 4	A	701	704	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	655	first strand
Strand 2	A	673	674	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	668	670	first strand
Strand 2	A	658	661	anti-parallel
Strand 3	A	689	692	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	230	231	first strand
Strand 2	B	215	221	anti-parallel
Strand 3	B	256	266	anti-parallel
Strand 4	B	189	200	anti-parallel
Strand 5	B	172	184	anti-parallel
Strand 6	B	314	321	parallel
Strand 7	B	344	348	anti-parallel
Strand 8	B	333	338	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	210	first strand
Strand 2	B	242	251	anti-parallel
Strand 3	B	233	237	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	280	first strand
Strand 2	B	286	291	anti-parallel
Strand 3	B	361	364	anti-parallel
Strand 4	B	326	329	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	372	first strand
Strand 2	B	377	382	anti-parallel
Strand 3	B	416	422	parallel
Strand 4	B	435	439	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	476	477	first strand
Strand 2	B	583	584	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	678	682	first strand
Strand 2	B	627	634	anti-parallel
Strand 3	B	617	624	anti-parallel
Strand 4	B	701	704	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	673	674	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	668	670	first strand
Strand 2	B	658	660	anti-parallel
Strand 3	B	690	692	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4P8Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
4P8Q