Analysis of interatomic Contacts of Structural Units in PDB entry:
4P98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4P98 entry

There are 3 chains in PDB entry 4P98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 33VAL 34
A
 VAL 36ALA 259
A
 LEU 261GLU 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 4P98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 61Right-handed alpha
Helix 2
AA2
A
75 89Right-handed alpha
Helix 3
AA3
A
98 110Right-handed alpha
Helix 4
AA4
A
122 129Right-handed 310
Helix 5
AA5
A
139 153Right-handed alpha
Helix 6
AA6
A
168 186Right-handed alpha
Helix 7
AA7
A
201 215Right-handed alpha
Helix 8
AA8
A
226 237Right-handed alpha
Helix 9
AA9
A
248 253Right-handed alpha
Helix 10
AB1
A
263 277Right-handed alpha
Helix 11
AB2
A
308 323Right-handed alpha
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There are 3 sheets in PDB entry 4P98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 70first strand
Strand 2
A
34 40parallel
Strand 3
A
93 97parallel
Strand 4
A
116 120parallel
Strand 5
A
133 138parallel
Strand 6
A
283 286parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 195first strand
Strand 2
A
159 164parallel
Strand 3
A
220 222parallel
Strand 4
A
240 241parallel
Strand 5
A
255 257parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
293 295anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il