Analysis of interatomic Contacts of Structural Units in PDB entry:
4P9Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4P9Y entry

There are 2 chains in PDB entry 4P9Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ASN 237
B
 ALA 1ASN 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 4P9Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 18Right-handed 310
Helix 2
AA2
A
80 85Right-handed alpha
Helix 3
AA3
A
226 230Right-handed 310
Helix 4
AA4
B
14 18Right-handed 310
Helix 5
AA5
B
80 85Right-handed alpha
Helix 6
AA6
B
226 230Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 4P9Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
24 29anti-parallel
Strand 3
A
4 10anti-parallel
Strand 4
A
209 215anti-parallel
Strand 5
A
88 96anti-parallel
Strand 6
A
170 175anti-parallel
Strand 7
A
140 144anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 39first strand
Strand 2
A
24 29anti-parallel
Strand 3
A
4 10anti-parallel
Strand 4
A
209 215anti-parallel
Strand 5
A
88 96anti-parallel
Strand 6
A
179 180anti-parallel
Back to list of sheets
Back to top of page

There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 78first strand
Strand 2
A
60 66anti-parallel
Strand 3
A
47 55anti-parallel
Strand 4
A
186 198anti-parallel
Strand 5
A
105 117anti-parallel
Strand 6
A
123 130anti-parallel
Strand 7
B
123 130anti-parallel
Strand 8
B
105 117anti-parallel
Strand 9
B
186 198anti-parallel
Strand 10
B
47 55anti-parallel
Strand 11
B
60 66anti-parallel
Strand 12
B
73 78anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
154 155anti-parallel
Strand 3
A
105 117anti-parallel
Strand 4
A
123 130anti-parallel
Strand 5
B
123 130anti-parallel
Strand 6
B
105 117anti-parallel
Strand 7
B
154 155anti-parallel
Strand 8
B
147 148anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
24 29anti-parallel
Strand 3
B
4 10anti-parallel
Strand 4
B
209 216anti-parallel
Strand 5
B
88 96anti-parallel
Strand 6
B
170 175anti-parallel
Strand 7
B
140 144anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 39first strand
Strand 2
B
24 29anti-parallel
Strand 3
B
4 10anti-parallel
Strand 4
B
209 216anti-parallel
Strand 5
B
88 96anti-parallel
Strand 6
B
179 180anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il