Analysis of interatomic Contacts of Structural Units in PDB entry:
4PA8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PA8 entry

There is 1 chain in PDB entry 4PA8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1002ILE 1247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 4PA8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1006 1018Right-handed alpha
Helix 2
AA2
A
1032 1044Right-handed alpha
Helix 3
AA3
A
1065 1075Right-handed alpha
Helix 4
AA4
A
1092 1103Right-handed alpha
Helix 5
AA5
A
1115 1126Right-handed alpha
Helix 6
AA6
A
1135 1137Right-handed 310
Helix 7
AA7
A
1138 1152Right-handed alpha
Helix 8
AA8
A
1162 1172Right-handed alpha
Helix 9
AA9
A
1190 1200Right-handed alpha
Helix 10
AB1
A
1212 1217Right-handed 310
Helix 11
AB2
A
1218 1225Right-handed alpha
Helix 12
AB3
A
1241 1247Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 4PA8.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1048 1052first strand
Strand 2
A
1079 1083parallel
Strand 3
A
1107 1110parallel
Strand 4
A
1129 1133parallel
Strand 5
A
1157 1160parallel
Strand 6
A
1176 1179parallel
Strand 7
A
1206 1210parallel
Strand 8
A
1229 1231parallel
Strand 9
A
1048 1052parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il