Analysis of interatomic Contacts of Structural Units in PDB entry:
4PAE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PAE entry

There is 1 chain in PDB entry 4PAE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 12ASP 718
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 4PAE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 25Right-handed 310
Helix 2
AA2
A
31 35Right-handed 310
Helix 3
AA3
A
50 57Right-handed alpha
Helix 4
AA4
A
59 72Right-handed alpha
Helix 5
AA5
A
80 84Right-handed 310
Helix 6
AA6
A
85 98Right-handed alpha
Helix 7
AA7
A
108 116Right-handed 310
Helix 8
AA8
A
118 122Right-handed 310
Helix 9
AA9
A
127 143Right-handed alpha
Helix 10
AB1
A
144 146Right-handed 310
Helix 11
AB2
A
147 164Right-handed alpha
Helix 12
AB3
A
227 231Right-handed 310
Helix 13
AB4
A
233 248Right-handed alpha
Helix 14
AB5
A
251 264Right-handed alpha
Helix 15
AB6
A
273 277Right-handed 310
Helix 16
AB7
A
285 289Right-handed 310
Helix 17
AB8
A
323 332Right-handed alpha
Helix 18
AB9
A
372 381Right-handed alpha
Helix 19
AC1
A
381 394Right-handed alpha
Helix 20
AC2
A
394 412Right-handed alpha
Helix 21
AC3
A
416 420Right-handed 310
Helix 22
AC4
A
430 434Right-handed 310
Helix 23
AC5
A
444 455Right-handed alpha
Helix 24
AC6
A
458 472Right-handed alpha
Helix 25
AC7
A
491 498Right-handed 310
Helix 26
AC8
A
499 518Right-handed alpha
Helix 27
AC9
A
520 541Right-handed alpha
Helix 28
AD1
A
561 566Right-handed alpha
Helix 29
AD2
A
567 569Right-handed 310
Helix 30
AD3
A
574 577Right-handed 310
Helix 31
AD4
A
586 599Right-handed alpha
Helix 32
AD5
A
601 615Right-handed alpha
Helix 33
AD6
A
636 643Right-handed alpha
Helix 34
AD7
A
672 681Right-handed alpha
Helix 35
AD8
A
681 693Right-handed alpha
Helix 36
AD9
A
696 713Right-handed alpha
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There are 5 sheets in PDB entry 4PAE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
208 209anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 268first strand
Strand 2
A
312 313anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 338first strand
Strand 2
A
344 348anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 573first strand
Strand 2
A
578 579anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
647 651first strand
Strand 2
A
657 661anti-parallel
Strand 3
A
667 671anti-parallel
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