Analysis of interatomic Contacts of Structural Units in PDB entry:
4PBG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PBG entry

There are 2 chains in PDB entry 4PBG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 468
B
 MET 1GLU 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 39 helices in PDB entry 4PBG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 21Right-handed alpha
Helix 2
2
A
33 42Right-handed alpha
Helix 3
3
A
51 56Right-handed alpha
Helix 4
4
A
55 66Right-handed alpha
Helix 5
5
A
76 81Right-handed alpha
Helix 6
6
A
89 106Right-handed alpha
Helix 7
7
A
120 125Right-handed alpha
Helix 8
8
A
126 130Right-handed 310
Helix 9
9
A
131 149Right-handed alpha
Helix 10
10
A
160 170Right-handed alpha
Helix 11
11
A
181 206Right-handed alpha
Helix 12
12
A
228 243Right-handed alpha
Helix 13
13
A
243 252Right-handed alpha
Helix 14
14
A
256 271Right-handed alpha
Helix 15
15
A
277 288Right-handed alpha
Helix 16
16
A
351 365Right-handed alpha
Helix 17
17
A
366 369Right-handed 310
Helix 18
18
A
391 411Right-handed alpha
Helix 19
19
A
433 435Right-handed 310
Helix 20
20
A
452 463Right-handed alpha
Helix 21
21
B
16 22Right-handed alpha
Helix 22
22
B
33 42Right-handed alpha
Helix 23
23
B
51 56Right-handed alpha
Helix 24
24
B
55 66Right-handed alpha
Helix 25
25
B
76 81Right-handed alpha
Helix 26
26
B
89 107Right-handed alpha
Helix 27
27
B
120 125Right-handed alpha
Helix 28
28
B
126 130Right-handed 310
Helix 29
29
B
131 149Right-handed alpha
Helix 30
30
B
161 170Right-handed alpha
Helix 31
31
B
181 206Right-handed alpha
Helix 32
32
B
228 243Right-handed alpha
Helix 33
33
B
243 253Right-handed alpha
Helix 34
34
B
256 271Right-handed alpha
Helix 35
35
B
277 288Right-handed alpha
Helix 36
36
B
351 365Right-handed alpha
Helix 37
37
B
366 369Right-handed 310
Helix 38
38
B
391 411Right-handed alpha
Helix 39
39
B
452 463Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 4PBG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
466 467anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
70 74parallel
Strand 3
A
109 115parallel
Strand 4
A
154 159parallel
Strand 5
A
211 217parallel
Strand 6
A
294 297parallel
Strand 7
A
371 376parallel
Strand 8
A
415 420parallel
Strand 9
A
10 13parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 223first strand
Strand 2
A
302 305parallel
Strand 3
A
332 334anti-parallel
Strand 4
A
325 328anti-parallel
Strand 5
A
312 314anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 442first strand
Strand 2
A
449 451anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 4first strand
Strand 2
B
466 467anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
70 74parallel
Strand 3
B
109 115parallel
Strand 4
B
154 159parallel
Strand 5
B
211 217parallel
Strand 6
B
293 297parallel
Strand 7
B
371 376parallel
Strand 8
B
415 420parallel
Strand 9
B
10 13parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 223first strand
Strand 2
B
302 305parallel
Strand 3
B
332 334anti-parallel
Strand 4
B
325 328anti-parallel
Strand 5
B
312 314anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
440 443first strand
Strand 2
B
448 451anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il