Analysis of interatomic Contacts of Structural Units in PDB entry:
4PBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PBP entry

There are 3 chains in PDB entry 4PBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ASN 207
B
 MET -2ASN 207
C
 PHE 1ASN 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 4PBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
148 152Right-handed 310
Helix 2
AA2
A
168 177Right-handed alpha
Helix 3
AA3
B
148 152Right-handed 310
Helix 4
AA4
B
168 177Right-handed alpha
Helix 5
AA5
C
148 152Right-handed 310
Helix 6
AA6
C
168 177Right-handed alpha
Helix 7
AA7
C
191 193Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 4PBP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
107 112anti-parallel
Strand 3
A
95 102anti-parallel
Strand 4
A
32 40anti-parallel
Strand 5
A
155 163anti-parallel
Strand 6
A
188 189anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 121first strand
Strand 2
A
107 112anti-parallel
Strand 3
A
95 102anti-parallel
Strand 4
A
32 40anti-parallel
Strand 5
A
155 163anti-parallel
Strand 6
A
7 11anti-parallel
Strand 7
A
201 205anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 85first strand
Strand 2
A
72 76anti-parallel
Strand 3
A
59 66anti-parallel
Strand 4
A
49 56anti-parallel
Strand 5
A
133 136anti-parallel
Strand 6
A
19 23anti-parallel
Strand 7
A
194 198anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 2first strand
Strand 2
B
194 198anti-parallel
Strand 3
B
19 23anti-parallel
Strand 4
B
133 136anti-parallel
Strand 5
B
49 56anti-parallel
Strand 6
B
59 60anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 2first strand
Strand 2
B
194 198anti-parallel
Strand 3
B
19 23anti-parallel
Strand 4
B
133 136anti-parallel
Strand 5
B
49 56anti-parallel
Strand 6
B
62 66anti-parallel
Strand 7
B
72 76anti-parallel
Strand 8
B
83 85anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 116first strand
Strand 2
B
107 112anti-parallel
Strand 3
B
95 102anti-parallel
Strand 4
B
32 40anti-parallel
Strand 5
B
155 163anti-parallel
Strand 6
B
188 189anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 121first strand
Strand 2
B
107 112anti-parallel
Strand 3
B
95 102anti-parallel
Strand 4
B
32 40anti-parallel
Strand 5
B
155 163anti-parallel
Strand 6
B
7 11anti-parallel
Strand 7
B
202 205anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
115 116first strand
Strand 2
C
107 112anti-parallel
Strand 3
C
95 102anti-parallel
Strand 4
C
32 40anti-parallel
Strand 5
C
155 163anti-parallel
Strand 6
C
188 189anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
120 121first strand
Strand 2
C
107 112anti-parallel
Strand 3
C
95 102anti-parallel
Strand 4
C
32 40anti-parallel
Strand 5
C
155 163anti-parallel
Strand 6
C
7 11anti-parallel
Strand 7
C
201 205anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 85first strand
Strand 2
C
72 76anti-parallel
Strand 3
C
59 66anti-parallel
Strand 4
C
49 56anti-parallel
Strand 5
C
133 136anti-parallel
Strand 6
C
19 23anti-parallel
Strand 7
C
194 198anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il