Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 4PCG entry
There are 5 chains in PDB entry 4PCG
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
A
|
VAL 22 | LYS 290 |
B
|
VAL 22 | LYS 290 |
C
|
VAL 22 | HIS 291 |
D
|
VAL 22 | LYS 290 |
E
|
VAL 22 | SER 271 |
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There are 14
helices in PDB entry 4PCG. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
| Helix 1 |
AA1 | A
| 31 |
35 | Right-handed 310 |
| Helix 2 |
AA2 | A
| 113 |
116 | Right-handed 310 |
| Helix 3 |
AA3 | A
| 263 |
270 | Right-handed 310 |
| Helix 4 |
AA4 | B
| 31 |
33 | Right-handed 310 |
| Helix 5 |
AA5 | B
| 113 |
116 | Right-handed 310 |
| Helix 6 |
AA6 | B
| 263 |
270 | Right-handed 310 |
| Helix 7 |
AA7 | C
| 31 |
35 | Right-handed 310 |
| Helix 8 |
AA8 | C
| 113 |
116 | Right-handed 310 |
| Helix 9 |
AA9 | C
| 263 |
270 | Right-handed 310 |
| Helix 10 |
AB1 | D
| 113 |
116 | Right-handed 310 |
| Helix 11 |
AB2 | D
| 263 |
270 | Right-handed 310 |
| Helix 12 |
AB3 | E
| 31 |
33 | Right-handed 310 |
| Helix 13 |
AB4 | E
| 113 |
116 | Right-handed 310 |
| Helix 14 |
AB5 | E
| 263 |
270 | Right-handed 310 |
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There are no sheets in PDB entry
4PCG
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il