Analysis of interatomic Contacts of Structural Units in PDB entry:
4PCV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PCV entry

There are 2 chains in PDB entry 4PCV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 2ILE 231
B
HIS 0ILE 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 4PCV. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
40 52Right-handed alpha
Helix 3
AA3
A
62 72Right-handed alpha
Helix 4
AA4
A
96 107Right-handed alpha
Helix 5
AA5
A
107 119Right-handed alpha
Helix 6
AA6
A
144 165Right-handed alpha
Helix 7
AA7
A
166 168Right-handed 310
Helix 8
AA8
A
205 217Right-handed alpha
Helix 9
AA9
A
218 222Right-handed 310
Helix 10
AB1
B
17 29Right-handed alpha
Helix 11
AB2
B
40 52Right-handed alpha
Helix 12
AB3
B
62 72Right-handed alpha
Helix 13
AB4
B
95 107Right-handed alpha
Helix 14
AB5
B
107 119Right-handed alpha
Helix 15
AB6
B
143 165Right-handed alpha
Helix 16
AB7
B
166 168Right-handed 310
Helix 17
AB8
B
208 217Right-handed alpha
Helix 18
AB9
B
219 223Right-handed 310
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There are 2 sheets in PDB entry 4PCV. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
54 57first strand
Strand 2
A
32 37parallel
Strand 3
A
8 12parallel
Strand 4
A
78 82parallel
Strand 5
A
126 130parallel
Strand 6
A
170 175parallel
Strand 7
A
227 230parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
54 57first strand
Strand 2
B
32 37parallel
Strand 3
B
8 12parallel
Strand 4
B
78 82parallel
Strand 5
B
126 130parallel
Strand 6
B
170 175parallel
Strand 7
B
227 230parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il