Analysis of interatomic Contacts of Structural Units in PDB entry:
4PDC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 4PDC entry

There are 6 chains in PDB entry 4PDC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 93	THR 215
B	SER 94	THR 215
C	GLU 93	THR 215
D	GLU 93	THR 215
E	GLY 0	ARG 149
F	GLY 0	ARG 149

There are 16 helices in PDB entry 4PDC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	119	129	Right-handed alpha
Helix 2	AA2	A	143	149	Right-handed 310
Helix 3	AA3	B	119	129	Right-handed alpha
Helix 4	AA4	B	143	149	Right-handed 310
Helix 5	AA5	C	119	129	Right-handed alpha
Helix 6	AA6	C	143	149	Right-handed 310
Helix 7	AA7	D	119	130	Right-handed alpha
Helix 8	AA8	D	143	149	Right-handed 310
Helix 9	AA9	E	41	45	Right-handed 310
Helix 10	AB1	E	49	64	Right-handed alpha
Helix 11	AB2	E	111	126	Right-handed alpha
Helix 12	AB3	E	129	146	Right-handed alpha
Helix 13	AB4	F	41	45	Right-handed 310
Helix 14	AB5	F	49	64	Right-handed alpha
Helix 15	AB6	F	111	125	Right-handed alpha
Helix 16	AB7	F	129	146	Right-handed alpha

There are 12 sheets in PDB entry 4PDC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	96	first strand
Strand 2	B	96	99	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	106	first strand
Strand 2	A	109	118	anti-parallel
Strand 3	A	207	213	anti-parallel
Strand 4	A	133	134	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	A	189	193	anti-parallel
Strand 3	A	197	201	anti-parallel
Strand 4	A	180	182	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	159	first strand
Strand 2	A	166	168	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	106	first strand
Strand 2	B	109	118	anti-parallel
Strand 3	B	207	214	anti-parallel
Strand 4	B	153	159	parallel
Strand 5	B	166	168	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	134	first strand
Strand 2	B	207	214	anti-parallel
Strand 3	B	153	159	parallel
Strand 4	B	189	193	anti-parallel
Strand 5	B	197	201	anti-parallel
Strand 6	B	180	182	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	99	first strand
Strand 2	D	94	96	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	134	first strand
Strand 2	C	207	214	anti-parallel
Strand 3	C	109	118	anti-parallel
Strand 4	C	104	106	anti-parallel
Strand 5	D	104	106	anti-parallel
Strand 6	D	109	118	anti-parallel
Strand 7	D	207	213	anti-parallel
Strand 8	D	133	134	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	168	first strand
Strand 2	C	153	160	anti-parallel
Strand 3	C	189	193	anti-parallel
Strand 4	C	197	201	anti-parallel
Strand 5	C	180	182	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	168	first strand
Strand 2	D	153	159	anti-parallel
Strand 3	D	189	193	anti-parallel
Strand 4	D	197	201	anti-parallel
Strand 5	D	180	182	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	37	39	first strand
Strand 2	E	28	32	anti-parallel
Strand 3	E	15	24	anti-parallel
Strand 4	E	1	12	anti-parallel
Strand 5	E	74	86	anti-parallel
Strand 6	E	89	98	anti-parallel
Strand 7	E	101	103	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	37	39	first strand
Strand 2	F	27	32	anti-parallel
Strand 3	F	15	24	anti-parallel
Strand 4	F	1	12	anti-parallel
Strand 5	F	75	86	anti-parallel
Strand 6	F	89	98	anti-parallel
Strand 7	F	101	103	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 4PDC

Analysis of interatomic Contacts of Structural Units in PDB entry:
4PDC