Analysis of interatomic Contacts of Structural Units in PDB entry:
4PDK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PDK entry

There are 2 chains in PDB entry 4PDK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8MET 266
B
 PRO 8SER 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 4PDK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 22Right-handed alpha
Helix 2
AA2
A
34 41Right-handed alpha
Helix 3
AA3
A
47 59Right-handed alpha
Helix 4
AA4
A
96 120Right-handed alpha
Helix 5
AA5
A
120 140Right-handed alpha
Helix 6
AA6
A
143 151Right-handed alpha
Helix 7
AA7
A
153 161Right-handed alpha
Helix 8
AA8
A
168 195Right-handed alpha
Helix 9
AA9
A
198 208Right-handed alpha
Helix 10
AB1
A
208 220Right-handed alpha
Helix 11
AB2
A
222 243Right-handed alpha
Helix 12
AB3
A
247 264Right-handed alpha
Helix 13
AB4
B
9 22Right-handed alpha
Helix 14
AB5
B
33 42Right-handed alpha
Helix 15
AB6
B
44 55Right-handed alpha
Helix 16
AB7
B
96 120Right-handed alpha
Helix 17
AB8
B
120 140Right-handed alpha
Helix 18
AB9
B
143 151Right-handed alpha
Helix 19
AC1
B
153 161Right-handed alpha
Helix 20
AC2
B
168 195Right-handed alpha
Helix 21
AC3
B
198 208Right-handed alpha
Helix 22
AC4
B
208 220Right-handed alpha
Helix 23
AC5
B
222 243Right-handed alpha
Helix 24
AC6
B
247 269Right-handed alpha
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There are no sheets in PDB entry 4PDK
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