Analysis of interatomic Contacts of Structural Units in PDB entry:
4PE6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 4PE6 entry

There are 2 chains in PDB entry 4PE6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 47THR 368
B
 LYS 47GLY 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 4PE6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 79Right-handed alpha
Helix 2
AA2
A
95 108Right-handed alpha
Helix 3
AA3
A
124 134Right-handed alpha
Helix 4
AA4
A
156 172Right-handed alpha
Helix 5
AA5
A
187 203Right-handed alpha
Helix 6
AA6
A
218 230Right-handed alpha
Helix 7
AA7
A
231 233Right-handed 310
Helix 8
AA8
A
244 256Right-handed alpha
Helix 9
AA9
A
267 277Right-handed alpha
Helix 10
AB1
A
291 305Right-handed alpha
Helix 11
AB2
A
321 323Right-handed 310
Helix 12
AB3
A
324 332Right-handed alpha
Helix 13
AB4
A
343 357Right-handed alpha
Helix 14
AB5
B
59 79Right-handed alpha
Helix 15
AB6
B
95 108Right-handed alpha
Helix 16
AB7
B
124 134Right-handed alpha
Helix 17
AB8
B
156 172Right-handed alpha
Helix 18
AB9
B
187 203Right-handed alpha
Helix 19
AC1
B
218 230Right-handed alpha
Helix 20
AC2
B
231 233Right-handed 310
Helix 21
AC3
B
244 256Right-handed alpha
Helix 22
AC4
B
267 277Right-handed alpha
Helix 23
AC5
B
291 305Right-handed alpha
Helix 24
AC6
B
321 323Right-handed 310
Helix 25
AC7
B
324 332Right-handed alpha
Helix 26
AC8
B
343 356Right-handed alpha
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There are 5 sheets in PDB entry 4PE6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
49 54parallel
Strand 3
A
113 117parallel
Strand 4
A
137 141parallel
Strand 5
A
151 155parallel
Strand 6
A
312 315parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 214first strand
Strand 2
A
176 182parallel
Strand 3
A
238 240parallel
Strand 4
A
261 264parallel
Strand 5
A
284 287parallel
Strand 6
A
318 319anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 89first strand
Strand 2
B
49 54parallel
Strand 3
B
113 117parallel
Strand 4
B
137 141parallel
Strand 5
B
151 155parallel
Strand 6
B
312 315parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 214first strand
Strand 2
B
176 182parallel
Strand 3
B
238 240parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
263 264first strand
Strand 2
B
284 287parallel
Strand 3
B
318 319anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il